PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523124.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 207aa    MW: 23726.7 Da    PI: 4.8891
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523124.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.74.3e-08133174854
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     + rrRR+ri +++  L++l+P       +K++ a++L +Av+Y k L
  XP_010523124.1 133 IARRRRERIAEKIRILKRLVPGG-----EKMDIASMLDEAVHYAKFL 174
                     67*******************96.....7**************8887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.687125174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-11130183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-8131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-11131183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-5133174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MNYRRDSYLL ENHTFNNNEE HDHDLMDIAM DMIINPFTPS SCPSFLPPET LIHLPSPSTT  60
TTLSANDQNN TRHHQEIVFS GDQELEEEEE ELDPVKELTY MVAAMQPVDI DPLNVPKPKR  120
RNVCVSNDPQ TVIARRRRER IAEKIRILKR LVPGGEKMDI ASMLDEAVHY AKFLERWIRR  180
LQSIHPPDFG SSASATAAGD QEDVPLR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118137KRRNVCVSNDPQTVIARRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523124.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019056483.11e-108PREDICTED: transcription factor IND-like
TrEMBLA0A078G9C41e-43A0A078G9C4_BRANA; BnaC09g46950D protein
STRINGXP_010523124.11e-153(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44492754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.12e-27bHLH family protein