PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010523126.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

C2H2

Protein Properties

Length: 244aa MW: 25813.3 Da PI: 8.2401

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010523126.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00052	122	144	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H XP_010523126.1 122 YECKTCNRTFPSFQALGGHRASH 144 99**********99999998887 PP
2	zf-C2H2	13.6	0.00019	200	222	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H XP_010523126.1 200 HECSICGSEFTSGQALGGHMRRH 222 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.91E-8	121	144	No hit	No description
Pfam	PF13912	2.0E-13	121	146	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.575	122	149	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.052	122	144	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	124	144	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.91E-8	195	222	No hit	No description
Gene3D	G3DSA:3.30.160.60	8.3E-4	198	222	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	6.8E-12	199	224	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.076	200	227	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.019	200	222	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	202	222	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MDVQDELGSD HAHHIIKGKR TKRQRSSSTA TAVTSKNSSA TAAGGVPEDY SSAVSSTTNT 60 TTITSSSSAD CTEEEEATAI CLIMLASGAG PPPHEKLERP EKTHKNPSEK TDHHENSRFC 120 VYECKTCNRT FPSFQALGGH RASHKKPRTD IEKTKSPLAT PKRSPSEEGQ NCQTKISGLT 180 LISSPASDSN NNNNKPSKVH ECSICGSEFT SGQALGGHMR RHRAATSAEA AGEGGNNPVG 240 ARAG

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010523126.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269\|PubMed:12837949, ECO:0000269\|PubMed:16244149}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010523126.1	1e-179	PREDICTED: zinc finger protein ZAT5-like, partial
Swissprot	Q681X4	2e-70	ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBL	A0A087GR31	7e-73	A0A087GR31_ARAAL; Uncharacterized protein
STRING	XP_010523126.1	1e-179	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5862	27	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	6e-62	C2H2 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]