PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523147.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family LBD
Protein Properties Length: 359aa    MW: 39169.6 Da    PI: 8.1614
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523147.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.85.7e-41721711100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+Ca++C+++pyf  ++p+kfa+vhk+FGasnv+kll ++pe++r da++slvyeA+ r+rdPvyG++g i++lq+q+++l+aela
  XP_010523147.1  72 PCAACKLLRRRCAEECPFSPYFSPREPHKFAAVHKVFGASNVSKLLLEVPESQRADAANSLVYEANLRLRDPVYGCMGAISALQHQIQSLQAELA 166
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_010523147.1 167 AVRTE 171
                     99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.94571172IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-4172169IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MLTSPLNYSM LGCQETEEIG EYNEIGKKIK REVIITKTTG GHAVLSSDGE GGVMGRRHVA  60
PTVGTMLNTV TPCAACKLLR RRCAEECPFS PYFSPREPHK FAAVHKVFGA SNVSKLLLEV  120
PESQRADAAN SLVYEANLRL RDPVYGCMGA ISALQHQIQS LQAELAAVRT ELIQKQELRI  180
ISLRRYLGPQ RDSRDLSGXT VEQIGFVEIG LVPVRKVISK GYLSLAGFNH LLSECIVGSC  240
LFERFERTPF RFRLLVGGFS LNISHQFGNN KRVESYHLLE LFCCLCPVLC TAEPPLPPPP  300
PPRTPPLALP SPSVVVSSSS SSSNSNSSAT ASMYNPPSSS AAAGYSNSMS SDNNVHYFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-417117410113LOB family transfactor Ramosa2.1
5ly0_B9e-417117410113LOB family transfactor Ramosa2.1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00283DAPTransfer from AT2G30340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523147.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019056488.10.0PREDICTED: LOW QUALITY PROTEIN: LOB domain-containing protein 13-like
STRINGXP_010523147.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.14e-77LOB domain-containing protein 13