PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523151.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 243aa    MW: 28005.4 Da    PI: 6.6768
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523151.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.43.9e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l+d+++++G ++W++ +++ g+ R++k+c++rw +yl
   XP_010523151.1 14 KGPWTPEEDRILIDYIRLHGHPNWRALPKHAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding53.36.6e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE+e +++++  lG++ W++Ia++++ gRt++++k+ w+++l
   XP_010523151.1  67 RGNFTPEEEETIIKLHGILGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.0E-26564IPR009057Homeodomain-like
PROSITE profilePS5129418.873961IPR017930Myb domain
SuperFamilySSF466891.76E-3010108IPR009057Homeodomain-like
SMARTSM007171.4E-151363IPR001005SANT/Myb domain
PfamPF002496.8E-171461IPR001005SANT/Myb domain
CDDcd001673.32E-121661No hitNo description
PROSITE profilePS5129426.11762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.2E-2765116IPR009057Homeodomain-like
SMARTSM007179.1E-1566114IPR001005SANT/Myb domain
PfamPF002493.5E-1567112IPR001005SANT/Myb domain
CDDcd001671.73E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGRAPCCEKM GLKKGPWTPE EDRILIDYIR LHGHPNWRAL PKHAGLLRCG KSCRLRWINY  60
LRPDIKRGNF TPEEEETIIK LHGILGNRWS AIAAKLPGRT DNEIKNVWHT HLKKRINHHN  120
NNNNNNNNNN KKKKEPDREH VSPQQSSSNA DTASTVDYSN NDEDFALFGD FPMMIDENFW  180
LDAVPTATMD DNALEKKTEF WEPPLEVEVH DGINKSNYSK LYSDDAEFWV GLLTSPSFDI  240
SVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-28121175109B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112133KKRINHHNNNNNNNNNNNKKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523151.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523151.10.0PREDICTED: myb-related protein Myb4-like
SwissprotQ9SJX82e-91MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A1J3K0N01e-95A0A1J3K0N0_NOCCA; Myb-related protein Myb4
STRINGXP_010523151.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-90myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]