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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_010523174.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 205aa MW: 23397.5 Da PI: 11.1631 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 12.3 | 0.00052 | 127 | 149 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C C+++F ++ L rH H
XP_010523174.1 127 YRCDACPRVFDSPQGLGRHRVFH 149
9******************8776 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50157 | 10.034 | 127 | 154 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 129 | 149 | IPR007087 | Zinc finger, C2H2 |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 205 aa Download sequence Send to blast |
MLQIRRSMPS PFTVSSPSSI RPKHLCPRCS RQAAAMRPRP RGRPPAKTRT NPKRSASMSS 60 SRMSGPDIRA PLSRESKSLA LCKIAEIKHV DEGEDDYYVY DDEDDATFSL TSRRTTGSKR 120 RRRRNGYRCD ACPRVFDSPQ GLGRHRVFHR NNPTRGVLLC SHCHRVFESS DRENVPARAD 180 HARFDLNLRP SLENNFPLDL NRLPA |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 118 | 123 | KRRRRR |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | XP_010523174.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010523174.1 | 1e-147 | PREDICTED: uncharacterized protein LOC104801559 | ||||
| STRING | XP_010523174.1 | 1e-147 | (Tarenaya hassleriana) | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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