PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523197.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family LBD
Protein Properties Length: 171aa    MW: 18353.8 Da    PI: 5.1986
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523197.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260111.75.2e-35471453100
          DUF260   3 aaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                     +aCk+lrrkC+++Cv+apyf +e+ ++ fa+vhk+FGasn +kll+ +p++ r da+ +l yeA ar+rdPv G+v++i++l+qq+ +l+aela+
  XP_010523197.1  47 EACKYLRRKCVEGCVFAPYFDSEDgTSLFAAVHKVFGASNATKLLSPIPPSLRLDAILTLSYEATARVRDPVFGCVSHIFSLHQQVVNLQAELAY 141
                     69******************998879********************************************************************* PP

          DUF260  97 lkee 100
                     ++++
  XP_010523197.1 142 VQAR 145
                     9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.63944146IPR004883Lateral organ boundaries, LOB
PfamPF031957.2E-3447143IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MSRPVLNGLN SGSLRTRLSS VWTLDAFTSE PDCLSVGSGS RDFVSGEACK YLRRKCVEGC  60
VFAPYFDSED GTSLFAAVHK VFGASNATKL LSPIPPSLRL DAILTLSYEA TARVRDPVFG  120
CVSHIFSLHQ QVVNLQAELA YVQARLSAVQ GLPPPPPAPE ASSEADLLEE P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-334813914104LOB family transfactor Ramosa2.1
5ly0_B2e-334813914104LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523197.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523197.11e-122PREDICTED: LOB domain-containing protein 31
SwissprotO813223e-55LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A498KKD93e-56A0A498KKD9_MALDO; Uncharacterized protein
STRINGXP_010523197.11e-121(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.12e-53LOB domain-containing protein 31