PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523231.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 192aa    MW: 21384.7 Da    PI: 4.9666
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523231.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.9e-1791141255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp +  k +r++lg+f t  +Aa+a++ a+ kl+g
  XP_010523231.1  91 HYRGVRRRP-WGKFAAEIRDPAK--KGTRIWLGTFETDLDAARAYDFAAFKLRG 141
                     7********.**********954..34**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.2E-3190150IPR001471AP2/ERF domain
PfamPF008471.4E-1191141IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-2291150IPR016177DNA-binding domain
SMARTSM003801.5E-3491155IPR001471AP2/ERF domain
PROSITE profilePS5103224.84391149IPR001471AP2/ERF domain
CDDcd000187.41E-2991149No hitNo description
PRINTSPR003674.5E-1392103IPR001471AP2/ERF domain
PRINTSPR003674.5E-13131151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MATVEEISTL EFMQKNLFED FKIPDGFMED FDFDSSSLSD LWCVEPVNPV PKQEPDSPVL  60
DPDSSSAPVL SDMKTSPPAQ NEATKLEETR HYRGVRRRPW GKFAAEIRDP AKKGTRIWLG  120
TFETDLDAAR AYDFAAFKLR GRKAILNFPL DAGKYDAPAN SGRKRRRSNG GSSSHRSLSS  180
SSSTDDDTIS DA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-2990150464ATERF1
3gcc_A8e-2990150464ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162166RKRRR
2162167RKRRRS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523231.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7773730.0KC777373.1 Cleome spinosa ESM1-like (At3g14210-like), ERF-like (At5g07580-like), and WD40 repeat-like superfamily protein (At5g07590-like) genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523231.11e-139PREDICTED: ethylene-responsive transcription factor ERF107-like
SwissprotQ9LY053e-75EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLT1SFX41e-121T1SFX4_9ROSI; ERF-like
STRINGXP_010523231.11e-138(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32292766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.12e-52ERF family protein
Publications ? help Back to Top
  1. Kim H,Go YS,Suh MC
    DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves.
    Plant Cell Physiol., 2018. 59(5): p. 966-977
    [PMID:29425344]