PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523238.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 300aa    MW: 33619.8 Da    PI: 9.446
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523238.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59e-20146196255
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp   + k +r++lg+++t+ eAa+a++ a+ +l+g
  XP_010523238.1 146 HYRGVRRRP-WGKFAAEIRDP---NrKGARIWLGTYDTPVEAARAYDVAAFRLRG 196
                     8********.**********9...6566*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.50E-32145204No hitNo description
Gene3DG3DSA:3.30.730.108.1E-32145205IPR001471AP2/ERF domain
PfamPF008473.1E-14146196IPR001471AP2/ERF domain
PROSITE profilePS5103225.291146204IPR001471AP2/ERF domain
SMARTSM003801.0E-36146210IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-23146206IPR016177DNA-binding domain
PRINTSPR003673.0E-13147158IPR001471AP2/ERF domain
PRINTSPR003673.0E-13186206IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MRIPLYTSST SLPLLHSHAQ IRTPIHPYTH KYTKRLNSKG QKMASNEEEA VALELIRQHL  60
LTDSSTPMET GFVSNFTFSC ETSTATESNP SQIFNQVQNF HQETSPKTLN PTNPKPNSTR  120
AQRKPSLPKI SVPRIGNKTE EEDVKHYRGV RRRPWGKFAA EIRDPNRKGA RIWLGTYDTP  180
VEAARAYDVA AFRLRGRKAI LNFPLEVDTT YEGRAAAEVG KRKRPESFSP TVEKLAARVK  240
MEEEEEGEEG NYDTVEMTAD KAPPLTPSSW MGFWDVGGDG IFSVPPLSPT SPNFSVISVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-28145209468ATERF1
3gcc_A6e-28145209468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523238.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7773731e-176KC777373.1 Cleome spinosa ESM1-like (At3g14210-like), ERF-like (At5g07580-like), and WD40 repeat-like superfamily protein (At5g07590-like) genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523238.10.0PREDICTED: ethylene-responsive transcription factor ERF104-like
SwissprotQ9FKG11e-84EF104_ARATH; Ethylene-responsive transcription factor ERF104
TrEMBLV4KKN72e-88V4KKN7_EUTSA; Uncharacterized protein
STRINGXP_010523238.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134641828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61600.12e-77ethylene response factor 104
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Moore M,Vogel M,Dietz K
    The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(10): p. 976479
    [PMID:25482793]