PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523302.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 172aa    MW: 19807.7 Da    PI: 8.8875
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523302.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.42.9e-1964117356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ eq+++Le+ Fe ++++  e++ +LAk+lgL+ rqV +WFqNrRa++k
  XP_010523302.1  64 KKRRLSVEQVKALEKNFEIENKLEPERKVKLAKELGLQPRQVAIWFQNRRARWK 117
                     456899***********************************************9 PP
2HD-ZIP_I/II130.37.8e-4263153191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     ekkrrls eqvk+LE++Fe e+kLeperKv+la+eLglqprqva+WFqnrRAR+ktkql++dy +Lk++ydalk+++++L++++++L +++
  XP_010523302.1  63 EKKRRLSVEQVKALEKNFEIENKLEPERKVKLAKELGLQPRQVAIWFQNRRARWKTKQLDRDYGVLKANYDALKRNRDALQRDNDSLLQQV 153
                     69*************************************************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.27E-2043121IPR009057Homeodomain-like
SMARTSM003891.8E-1862123IPR001356Homeobox domain
PROSITE profilePS5007117.0763119IPR001356Homeobox domain
PfamPF000461.9E-1664117IPR001356Homeobox domain
CDDcd000861.28E-1764120No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2066125IPR009057Homeodomain-like
PRINTSPR000313.1E-69099IPR000047Helix-turn-helix motif
PROSITE patternPS00027094117IPR017970Homeobox, conserved site
PRINTSPR000313.1E-699115IPR000047Helix-turn-helix motif
PfamPF021835.8E-14119154IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MKRSLGSSES LGAFMSVCRT SGDEQMMSPR STTNFLYTNV QDFPAMIDDD EGCHVAVACG  60
GGEKKRRLSV EQVKALEKNF EIENKLEPER KVKLAKELGL QPRQVAIWFQ NRRARWKTKQ  120
LDRDYGVLKA NYDALKRNRD ALQRDNDSLL QQVIYLLCVF FNYGANYIDL MI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111119RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment. Binds to the DNA sequence 5'-CAATNATTG-3'. {ECO:0000269|PubMed:12678559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523302.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:12678559, ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523302.11e-127PREDICTED: homeobox-leucine zipper protein ATHB-5-like isoform X2
SwissprotP466675e-66ATHB5_ARATH; Homeobox-leucine zipper protein ATHB-5
TrEMBLA0A1J3CE441e-66A0A1J3CE44_NOCCA; Homeobox-leucine zipper protein ATHB-5
TrEMBLA0A1J3JD801e-66A0A1J3JD80_NOCCA; Homeobox-leucine zipper protein ATHB-5
TrEMBLE4MXK01e-68E4MXK0_EUTHA; mRNA, clone: RTFL01-23-D07
STRINGXP_010523301.11e-124(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.12e-68homeobox protein 5
Publications ? help Back to Top
  1. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  4. Stamm P, et al.
    The Transcription Factor ATHB5 Affects GA-Mediated Plasticity in Hypocotyl Cell Growth during Seed Germination.
    Plant Physiol., 2017. 173(1): p. 907-917
    [PMID:27872245]