PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010523351.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 272aa MW: 30557.9 Da PI: 9.7141

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010523351.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.1	2e-15	87	138	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r +h ++Er+RR+++N+ ++ Lr+++P++ +s+K + a+i+ A++Y+k+L+ XP_010523351.1 87 QRITHIAVERNRRKQMNHLLSVLRSIMPPS---YSQKGDQASIVGGAIKYVKELE 138 799*************************...*****************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.46E-13	85	142	No hit	No description
PROSITE profile	PS50888	15.574	86	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.64E-18	86	158	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-12	87	138	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.1E-14	88	149	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.3E-11	92	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MTIEAQVMFR QDEPLNYEMF DYYHVSNATA SWQTTAAAAA GAVAPSISSP ENRFSGETGE 60 LEGKPPLRKR RRRKMRSEKN VEEIEHQRIT HIAVERNRRK QMNHLLSVLR SIMPPSYSQK 120 GDQASIVGGA IKYVKELEQI LQSLEAQKAI QSKQPQSQSI FSNFFILPQY STAAATFSGG 180 RIRAAVADVE VTMAERHANI KVLTKAQPSL LSKMVTEFYS LGLTVLCLNL TTSQHMVLFT 240 FSVKVEETVQ VTSVDDIASA VHELVRRIQR EN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	67	71	RKRRR
2	67	73	RKRRRRK
3	67	74	RKRRRRKM
4	68	73	KRRRRK
5	69	75	RRRRKMR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010523351.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010523351.1	0.0	PREDICTED: transcription factor bHLH99
Swissprot	Q9FKQ6	3e-72	BH099_ARATH; Transcription factor bHLH99
TrEMBL	A0A1U8B9D6	2e-74	A0A1U8B9D6_NELNU; transcription factor bHLH96
TrEMBL	A0A1U8ER32	3e-74	A0A1U8ER32_CAPAN; transcription factor bHLH96-like
STRING	XP_010523351.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14959	16	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65320.1	6e-71	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]