PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523352.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family AP2
Protein Properties Length: 475aa    MW: 52286.7 Da    PI: 9.0309
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523352.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.71.6e-14213272155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  XP_010523352.1 213 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEDKAARAYDLAALKYWG 272
                     57*******************666664478446**********99*************98 PP
2AP2507.3e-16315366155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  XP_010523352.1 315 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 366
                     57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.05E-21213282No hitNo description
SuperFamilySSF541712.55E-17213282IPR016177DNA-binding domain
PfamPF008471.9E-11213272IPR001471AP2/ERF domain
SMARTSM003802.8E-28214286IPR001471AP2/ERF domain
PROSITE profilePS5103219.137214280IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-16214281IPR001471AP2/ERF domain
PRINTSPR003672.4E-6215226IPR001471AP2/ERF domain
CDDcd000186.38E-11315376No hitNo description
SuperFamilySSF541717.19E-18315376IPR016177DNA-binding domain
PfamPF008473.1E-10315366IPR001471AP2/ERF domain
SMARTSM003803.1E-30316380IPR001471AP2/ERF domain
PROSITE profilePS5103219.111316374IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-18316375IPR001471AP2/ERF domain
PRINTSPR003672.4E-6356376IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
RAKKGKRDLR GKEKGWTNQK PQELFKKEAQ ITASMADSTF LNQNPIPKLE DFLGDSSSIV  60
RYSDNQTDTQ GSSLTQIYDH RHRHRHRQSD TSGIFSDHDD LKAIVGFPSV FSTNSGSEVD  120
DSASIGRTHL FCTTGGAEFL GHVVESPGTE LGFSGGGALS LGVVNANAGP YSGSNDEGNI  180
TVKRVSVNAN AVAAEETPES SKKIADTFGQ RTSIYRGVTR HRWTGRYEAH LWDNSCRREG  240
QARKGRQVYL GGYDKEDKAA RAYDLAALKY WGPTATTNFP ISNYTKEMDE MKHSTKQEFI  300
ASLRRKSSGF SRGASIYRGV TRHHQQGRWQ ARIGRVAGNK DLYLGTFATE EEAAEAYDIA  360
AIKFRGINAV TNFEMSRYDI EAIMKSSLPI GGAAKRLKLS SESSSSSDQN PGLTHQSSSD  420
HIHLVQSYGI PFEPAALYHQ NHFQHLPAGS DSSGSNTTVP APMAGFFLWP DHQSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523352.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523352.20.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
RefseqXP_019056641.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
RefseqXP_019056642.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A1J3E7580.0A0A1J3E758_NOCCA; AP2-like ethylene-responsive transcription factor AIL6
STRINGXP_010523352.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65510.11e-156AINTEGUMENTA-like 7
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]