PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523405.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 352aa    MW: 38963.8 Da    PI: 6.1884
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523405.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.74.8e-14158204354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+ErrRR+riN+ +++Lr++lP+      +K +Ka+ L ++++++k+L
  XP_010523405.1 158 KSHSEAERRRRERINNHLAKLRSILPNT-----TKTDKASLLAEVIQHVKEL 204
                     79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.85155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-11158204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-15159215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-15159214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-13161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.51E-5168207No hitNo description
CDDcd048731.65E-6246314No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MCAKKEEEGD CSRAMNNIQN YQNNLLLSQQ QQPTSSDIFG TSNNAGFMSI FPQDHVSPVV  60
PWPPPIQPFN PTRESDPFLL PSPPASFYGN FFNRSRFGYE GFGATSAHHH QHEHLRILSE  120
ALGPVVQAGT GHPFGLQAEL GKMTAQEIMD AKALAASKSH SEAERRRRER INNHLAKLRS  180
ILPNTTKTDK ASLLAEVIQH VKELKRQTSQ IAETNPVPTE TDEITVDVSE EAVEEQQDGK  240
FVIKASICCD DRSDLLPDLI KTLKALRLKT LKAEITTVGC RVKNVLLVTG EESNIGDEQM  300
YCIGSIQEAL RAVMDKSSVE ESSASGNAKR QRMSSNNGIT IVEPQQQQQQ QS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163168ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523405.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523405.10.0PREDICTED: transcription factor bHLH30-like isoform X2
SwissprotQ9S7Y11e-155BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A1J3GAQ21e-160A0A1J3GAQ2_NOCCA; Transcription factor bHLH30
STRINGXP_010523404.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-119bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]