PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523478.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 470aa    MW: 51207.7 Da    PI: 8.2174
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523478.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1084.5e-34207263259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dD ynWrKYGqK+vkgsefprsYY+Ct++gCpvkkkvers  d++v+ei+Y+g+Hnh+
  XP_010523478.1 207 DDLYNWRKYGQKQVKGSEFPRSYYKCTHPGCPVKKKVERSL-DGQVTEIIYKGQHNHQ 263
                     8****************************************.***************8 PP
2WRKY105.82.3e-33371429159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+a+d k+v++tYeg+Hnh+
  XP_010523478.1 371 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERAATDSKAVITTYEGKHNHD 429
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.5E-30200265IPR003657WRKY domain
PROSITE profilePS5081124.432201265IPR003657WRKY domain
SuperFamilySSF1182904.84E-26204265IPR003657WRKY domain
SMARTSM007743.1E-38206264IPR003657WRKY domain
PfamPF031061.3E-25207263IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.4E-37356431IPR003657WRKY domain
SuperFamilySSF1182901.96E-29363431IPR003657WRKY domain
PROSITE profilePS5081138.285366431IPR003657WRKY domain
SMARTSM007748.4E-39371430IPR003657WRKY domain
PfamPF031061.2E-25372429IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MAEKEEQPST SKSSGRAPPR PTISLPPRPF GDVFFNGGSG FSPGPMTLVS NLFSDSDEFK  60
SFSQLLAGAM ASPAAAAAVA SQQRPESSGD GGGGNSSGEV DPRFKQSRPT GLMITQPPAM  120
FTVPPGLSPA TLLDSPSFLG LFSPVQGAFG MTHQQALAQV TAQAVQANPH LQPHQPQYPP  180
SSAPPISDLS VQERRAQPLN AADKPADDLY NWRKYGQKQV KGSEFPRSYY KCTHPGCPVK  240
KKVERSLDGQ VTEIIYKGQH NHQPPQNNKR GNRDINGITV NNPGNSDQAR SFSKTRRDQE  300
ASQATTTEQI SEASDSEEVG NAENCAEEKD EDEPDPKRRN TEVVVSETAA SHRTVTEPRI  360
IVQTTSEVDL LDDGYRWRKY GQKVVKGNPY PRSYYKCTTP GCNVRKHVER AATDSKAVIT  420
TYEGKHNHDV PAARTSSHAT AQLRPDNLHA SVNLSQQPVA RLRLKEEQIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-43207432878Probable WRKY transcription factor 4
2lex_A3e-43207432878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523478.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523478.10.0PREDICTED: probable WRKY transcription factor 4
SwissprotQ9XI900.0WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A1J3CZF00.0A0A1J3CZF0_NOCCA; Putative WRKY transcription factor 4
STRINGXP_010523478.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-174WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]