PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010523498.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

SBP

Protein Properties

Length: 241aa MW: 26983.3 Da PI: 8.7076

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010523498.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	125.7	1.9e-39	11	86	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv gC++dls k+yhrrh+vCe hsk p+v+v+g+e+rfCqqCsrfh l efD ekrsCrrrLa+hnerrrk+ XP_010523498.1 11 ICQVYGCDKDLSCSKNYHRRHRVCELHSKKPKVMVNGVERRFCQQCSRFHLLWEFDGEKRSCRRRLAGHNERRRKS 86 5*************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.6E-32	8	73	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.522	9	86	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	6.28E-37	10	87	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.6E-31	12	85	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MDEGARIAKP ICQVYGCDKD LSCSKNYHRR HRVCELHSKK PKVMVNGVER RFCQQCSRFH 60 LLWEFDGEKR SCRRRLAGHN ERRRKSRLLG LARKPSQESA KALSPHGFMD AKPYCSDGSS 120 SGKAPAFQEH PSVSMSSSSS SGGGASSRAL SLLSTDSQDL YQSHDSNRMM HCSHAMGDTG 180 LARPDTMILY QDPELLNGTN ACVLSEPEST VDLLQLSSHL RRVEQQRSFL SFPDSYNVES 240 Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	5e-28	11	85	10	84	squamosa promoter binding protein-like 4

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010523498.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010523498.1	1e-179	PREDICTED: squamosa promoter-binding-like protein 6
STRING	XP_010523498.1	1e-178	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	9e-39	SBP family protein