PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523499.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MIKC_MADS
Protein Properties Length: 222aa    MW: 25643.2 Da    PI: 9.5886
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523499.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.94.3e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLCdae+a+iifs++gklyey+s
  XP_010523499.1  9 KRIENKINRQVTFAKRRNGLLKKAFELSVLCDAEIALIIFSNRGKLYEYCS 59
                    79***********************************************96 PP
2K-box80.34.7e-27821748100
           K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     s++++++++ +q++ kL++++e+Lq++qR++lGe++++L + eL+ Le+q+++slk+iRs+K+++ leq++el++ke++l e+n+ Lr+klee
  XP_010523499.1  82 SQSAKEMQEKHQDYLKLRSRVETLQHSQRRFLGEGVGELGVDELELLERQVDTSLKQIRSTKTKFRLEQLSELKRKEEMLMETNEGLRRKLEE 174
                     478899************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.856161IPR002100Transcription factor, MADS-box
SMARTSM004323.7E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.89E-32278IPR002100Transcription factor, MADS-box
CDDcd002651.07E-40273No hitNo description
PRINTSPR004041.4E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-323859IPR002100Transcription factor, MADS-box
PfamPF014866.0E-2285172IPR002487Transcription factor, K-box
PROSITE profilePS5129714.1188178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAFELSVLCD AEIALIIFSN RGKLYEYCSS  60
PDGTANAIER YRKWRYETMD PSQSAKEMQE KHQDYLKLRS RVETLQHSQR RFLGEGVGEL  120
GVDELELLER QVDTSLKQIR STKTKFRLEQ LSELKRKEEM LMETNEGLRR KLEEREAAIN  180
KWQWGASGPG TSLAADTPNG GEGFFQLLQS NRGVQIMLDI SE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A1e-21811729101Developmental protein SEPALLATA 3
4ox0_B1e-21811729101Developmental protein SEPALLATA 3
4ox0_C1e-21811729101Developmental protein SEPALLATA 3
4ox0_D1e-21811729101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the CArG box DNA sequence 5'-CC (A/T)6 GG-3' (PubMed:7632923, PubMed:25183521). Plays an important role in the determination of flower meristem identity. Involved in the specification of sepal identity. Contributes to the development of petals, stamens and carpels (PubMed:15530395). {ECO:0000269|PubMed:15530395, ECO:0000269|PubMed:25183521, ECO:0000269|PubMed:7632923}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523499.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6231635e-50AB623163.2 Pyrus pyrifolia var. culta PpMADS9-1 mRNA for MADS-box protein, complete cds.
GenBankAJ0016815e-50AJ001681.1 Malus domestica mRNA for MADS box protein MdMADS8.
GenBankKC4152375e-50KC415237.1 Malus domestica cultivar Fuji Beni Shogun MADS8-2 mRNA, complete cds.
GenBankKC4152385e-50KC415238.1 Malus domestica cultivar Fuji Beni Shogun MADS8-1 mRNA, complete cds.
GenBankKP1640025e-50KP164002.1 Pyrus pyrifolia clone PpSEP1-1 SEP1-like MADS-box protein mRNA, complete cds.
GenBankKP1640165e-50KP164016.1 Pyrus pyrifolia clone PpSEP1-2 SEP1-like MADS-box protein mRNA, complete cds.
GenBankU789475e-50U78947.1 Malus domestica MADS-box protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523499.11e-162PREDICTED: agamous-like MADS-box protein AGL3
SwissprotP293831e-99AGL3_ARATH; Agamous-like MADS-box protein AGL3
TrEMBLA0A397XVH44e-99A0A397XVH4_BRACM; Uncharacterized protein
STRINGXP_010523499.11e-162(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71352440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.26e-92MIKC_MADS family protein
Publications ? help Back to Top
  1. Maejima K, et al.
    Degradation of class E MADS-domain transcription factors in Arabidopsis by a phytoplasmal effector, phyllogen.
    Plant Signal Behav, 2015. 10(8): p. e1042635
    [PMID:26179462]