PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523506.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HSF
Protein Properties Length: 322aa    MW: 36048 Da    PI: 6.8741
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523506.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.53.3e-36321232102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d++l+++isw+e+g+sfvv++++ fa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k+ll++
  XP_010523506.1  32 FLTKTYQLVDDHSLDNVISWNEDGSSFVVWNPTVFASDLLPRYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFRRGEKRLLCE 117
                     9*****************************************************************99.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  XP_010523506.1 118 IQRRKI 123
                     ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.4E-3823116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.6E-5828121IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.16E-3529121IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.6E-3232121IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-203255IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-207082IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407195IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-208395IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MAPCPEEHTN TNNVHAVATV SGESQRSVPT PFLTKTYQLV DDHSLDNVIS WNEDGSSFVV  60
WNPTVFASDL LPRYFKHNNF SSFVRQLNTY GFRKVVPDRW EFSNDCFRRG EKRLLCEIQR  120
RKISPPAVTG ASLPLTDQGI PTAAAKPVIT PSNSGEEQVI SPSSWYSKTV GSGGGGGMME  180
LVEENEKLRK QNIQLNRELA QMKNLCNDIF SLMTNYAGSH PNNRYENSYH DVLPAKRFSG  240
ETEKPAAESE DEGSQKLFGF PIGLKRTRSG GDQKAEEQQK TISLSLRQPG ESSDGGGGER  300
RESEETRWLR RHYGIANERV CN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-243212129129Heat shock factor protein 1
5d5v_B9e-243212129129Heat shock factor protein 1
5d5v_D9e-243212129129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523506.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523506.10.0PREDICTED: heat stress transcription factor B-2a
SwissprotQ9SCW41e-108HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A061G1751e-116A0A061G175_THECC; Heat shock transcription factor B2A, putative
STRINGXP_010523506.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-102heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]