PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523708.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MIKC_MADS
Protein Properties Length: 254aa    MW: 29226.2 Da    PI: 8.9349
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523708.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.23.5e-31958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krienk+nrqvtfskRrng+lKKA+ELSvLCdae+a+iifs++gklye+ 
  XP_010523708.1  9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEIALIIFSTRGKLYEFG 58
                    79**********************************************95 PP
2K-box85.41.2e-2876176499
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk......ekelqeenk 92 
                     s+++   e++++s++qe++kLk+++e+L r+qRhllGedL++++++eLq Le+qLe +l+  R++K+++++e++eel+kk      e++l ++nk
  XP_010523708.1  76 SQDN-RVERETQSWYQEVTKLKAKYESLLRTQRHLLGEDLGQMNVRELQTLEKQLEVALSMTRQRKTQVMMEHMEELRKKsslewqERQLGDINK 169
                     4455.456779********************************************************************9665555678888888 PP

           K-box  93 aLrkkle 99 
                     +Lr kle
  XP_010523708.1 170 QLRIKLE 176
                     8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.165161IPR002100Transcription factor, MADS-box
CDDcd002655.54E-43270No hitNo description
SuperFamilySSF554553.4E-32286IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-32323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-323859IPR002100Transcription factor, MADS-box
PfamPF014861.9E-2582175IPR002487Transcription factor, K-box
PROSITE profilePS5129716.04885181IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0009911Biological Processpositive regulation of flower development
GO:0010094Biological Processspecification of carpel identity
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048455Biological Processstamen formation
GO:0048459Biological Processfloral whorl structural organization
GO:0048509Biological Processregulation of meristem development
GO:0048833Biological Processspecification of floral organ number
GO:0080060Biological Processintegument development
GO:0080112Biological Processseed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEIALIIFST RGKLYEFGSV  60
GIGKTIERYQ RSYSCSQDNR VERETQSWYQ EVTKLKAKYE SLLRTQRHLL GEDLGQMNVR  120
ELQTLEKQLE VALSMTRQRK TQVMMEHMEE LRKKSSLEWQ ERQLGDINKQ LRIKLEAEGH  180
CFNAIQDLWA NSAAAVAGPS TSSFHLQSSH PNSMDCDTEP FLQIGFQQHY VQGEGSSVTK  240
SAACETNFVQ GWVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-21169169MEF2C
5f28_B7e-21169169MEF2C
5f28_C7e-21169169MEF2C
5f28_D7e-21169169MEF2C
6byy_A7e-21169169MEF2 CHIMERA
6byy_B7e-21169169MEF2 CHIMERA
6byy_C7e-21169169MEF2 CHIMERA
6byy_D7e-21169169MEF2 CHIMERA
6bz1_A8e-21180179MEF2 CHIMERA
6bz1_B8e-21180179MEF2 CHIMERA
6bz1_C8e-21180179MEF2 CHIMERA
6bz1_D8e-21180179MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Forms a heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00315DAPTransfer from AT2G45650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523708.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523708.10.0PREDICTED: agamous-like MADS-box protein AGL6 isoform X1
SwissprotP293861e-140AGL6_ARATH; Agamous-like MADS-box protein AGL6
TrEMBLA0A087H5F21e-137A0A087H5F2_ARAAL; Uncharacterized protein
STRINGXP_010523708.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43022654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.11e-142AGAMOUS-like 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Dreni L,Zhang D
    Flower development: the evolutionary history and functions of the AGL6 subfamily MADS-box genes.
    J. Exp. Bot., 2016. 67(6): p. 1625-38
    [PMID:26956504]