PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523728.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 806aa    MW: 88093 Da    PI: 6.1197
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523728.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.92.2e-20131186156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++eLe++F++ ++p++++r eL+++l+L+ rqVk+WFqNrR+++k
  XP_010523728.1 131 KKRYHRHTPQQIQELESVFKEYPHPDEKQRLELSRRLNLDPRQVKFWFQNRRTQMK 186
                     688999***********************************************999 PP
2START185.82.2e-583355571206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                     ela++a++elvk a+a+ep+Wv+ss    e +n +e+ ++f++  v      + +ea+r++g+v+ ++  lve+l+d+  +W e+++    + +t
  XP_010523728.1 335 ELALAAMDELVKIAQAREPLWVRSSdsgrEVLNHEEYERNFSSC-VgpkregFVSEASREVGMVIINSLALVETLMDSE-RWAEMFPcmiaRTST 427
                     5899*********************8888888888888888654.36999999**************************.*************** PP

                     EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
           START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169
                     +e issg      galqlm+aelq+lsplvp R + f+R+++q+ +g+w++vdvS+d  ++ +  +++  +++lpSg+l+++++ng+skv wveh
  XP_010523728.1 428 TEIISSGvggtrnGALQLMQAELQLLSPLVPvRRVSFLRFCKQHAEGVWAVVDVSIDTIRDSS--AGSPSCGRLPSGCLVQDMPNGYSKVKWVEH 520
                     *************************************************************76..56666777********************** PP

                     EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++++++h ++r+lv+sgla+gak+w a+lqrqce+
  XP_010523728.1 521 AEYEESQIHRMYRPLVSSGLAFGAKRWIAALQRQCEC 557
                     ***********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.68E-21117188IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-21118182IPR009057Homeodomain-like
PROSITE profilePS5007117.848128188IPR001356Homeobox domain
SMARTSM003892.1E-19129192IPR001356Homeobox domain
CDDcd000863.00E-19130188No hitNo description
PfamPF000465.6E-18131186IPR001356Homeobox domain
PROSITE patternPS000270163186IPR017970Homeobox, conserved site
PROSITE profilePS5084840.531326560IPR002913START domain
SuperFamilySSF559612.88E-30327557No hitNo description
CDDcd088754.56E-114330556No hitNo description
SMARTSM002341.2E-46335557IPR002913START domain
PfamPF018523.8E-50335557IPR002913START domain
SuperFamilySSF559612.33E-18578794No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 806 aa     Download sequence    Send to blast
MDMHLSDKPL RFGFMNFSGF LDDSSGDAPR LLSDVSFANH FSSSAAAAIA QPHRGGFVPP  60
LAKPMFSSPG LSLGLQTNVE SNGEVTRGGE SFEVSANRRS REDEPESRSG SDNADGLSGD  120
DQDAAERPPR KKRYHRHTPQ QIQELESVFK EYPHPDEKQR LELSRRLNLD PRQVKFWFQN  180
RRTQMKTQLE RHENALLRQE NDRLRSENMS IREAVRNPIC GDCGGHAVLG EVSLEEQHLR  240
IENARLRDEL DRICALAGKF LGRPIPSHPL PDSALELGVG SNNAGFGVSS PPLPLVPPTG  300
FEIPAAGSGL APASRPPLAS TANVTGPDQR QMYLELALAA MDELVKIAQA REPLWVRSSD  360
SGREVLNHEE YERNFSSCVG PKREGFVSEA SREVGMVIIN SLALVETLMD SERWAEMFPC  420
MIARTSTTEI ISSGVGGTRN GALQLMQAEL QLLSPLVPVR RVSFLRFCKQ HAEGVWAVVD  480
VSIDTIRDSS AGSPSCGRLP SGCLVQDMPN GYSKVKWVEH AEYEESQIHR MYRPLVSSGL  540
AFGAKRWIAA LQRQCECLTI LMSSTVSSSF PTPISCSGRK SMLKLAQRMT ENFCGGVCAS  600
SAQKWSKLNV GNIDEDVRIM TRKSVDNPGE PPGIVLSAAT SVWLRGEGAR RLFDFLRDER  660
LRSEWDILSN GGPMQEMAHV AKGQDLSNCV SLLRASAMNA NQSSMLVLQE TCIDTAGALV  720
VYAPVDIPAM HVVMNGGDSA YVALLPSGFA IVPDSGQMEE GGSLLTVAFQ ILVNSLPTAK  780
LTVESVDTVN NLISCTVQKI RAALLP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00418DAPTransfer from AT3G61150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523728.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523728.10.0PREDICTED: homeobox-leucine zipper protein HDG1-like
SwissprotQ9M2E80.0HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBLA0A067JXS10.0A0A067JXS1_JATCU; Uncharacterized protein
STRINGXP_010523728.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]