PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523814.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 557aa    MW: 61649.2 Da    PI: 7.7079
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523814.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.3e-13397443455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er RR+++N++f  Lr+++Pk +      K++Ka+ L  A+ YI++Lq
  XP_010523814.1 397 NHVEAERMRREKLNQRFYALRSVVPKiS------KMDKASLLGDAIAYINELQ 443
                     799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.3E-5346235IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.494393442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-18396459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.20E-13396447No hitNo description
PfamPF000101.6E-10397443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-18397455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-16399448IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MGTLRWDEED KAMVTAVLGH RAFDYLRASS VSSENLCATM GNDESLQNKL SDLVDRPNSM  60
NFSWNYAIVW QLSQSRSGHL VLGWGDGCCR EPNEEEESKR VRVRNRGLEE ETWRNVIRKR  120
VLQKLHGFSG GSDEDNYALG LDRVTDTEMF FLVSMYFSFP YGEGGPGRCF ASGIHFWISD  180
ALNTDSDYCF RSFVAKSAGI RTIVMVPMDG GVVELGSVRS LPESMELVHS VRSLFSPRAH  240
QTPTFFPHAG AVDRNTSVAG NKTGGVHKLF GHELSNSNHV HANPPCKENV FAGKLDERFP  300
PQAWEAHQRM NGSQPTDTNM QGHVSASKED SRLDNNHQSE LARVAATPAN AISENQDSRA  360
KKRAGVAAAA AGAAAVDEKR PRKRGRKPAN GREEPLNHVE AERMRREKLN QRFYALRSVV  420
PKISKMDKAS LLGDAIAYIN ELQEKVKAMK AERTRTGESN PNPDVEIQTL NGEVVVQVSS  480
PLDSHPVSRI IQAMRRSQVR VLESKLSPID NTVFHTFVIK SNGSELLTKE KLMAAIYPET  540
GSDEPSPSSG SQVSVAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-27391456267Transcription factor MYC2
5gnj_B4e-27391456267Transcription factor MYC2
5gnj_E4e-27391456267Transcription factor MYC2
5gnj_F4e-27391456267Transcription factor MYC2
5gnj_G4e-27391456267Transcription factor MYC2
5gnj_I4e-27391456267Transcription factor MYC2
5gnj_M4e-27391456267Transcription factor MYC2
5gnj_N4e-27391456267Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1378386KRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Regulates positively abscisic acid (ABA) response. Confers drought tolerance and sensitivity to ABA. {ECO:0000269|PubMed:17828375}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523814.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently by ABA and polyethylene glycol (PEG). {ECO:0000269|PubMed:17828375}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523814.10.0PREDICTED: transcription factor ABA-INDUCIBLE bHLH-TYPE-like
SwissprotQ9ZPY80.0AIB_ARATH; Transcription factor ABA-INDUCIBLE bHLH-TYPE
TrEMBLD7LEK30.0D7LEK3_ARALL; Basic helix-loop-helix family protein
STRINGXP_010523814.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37582759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.10.0ABA-inducible BHLH-type transcription factor
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Thatcher LF, et al.
    Characterization of a JAZ7 activation-tagged Arabidopsis mutant with increased susceptibility to the fungal pathogen Fusarium oxysporum.
    J. Exp. Bot., 2016. 67(8): p. 2367-86
    [PMID:26896849]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]