PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010523823.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Dof

Protein Properties

Length: 357aa MW: 38401.4 Da PI: 8.8353

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010523823.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.2	1.8e-38	66	127	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ++++l+cprC+stntkfCyynnysl+qPryfC++CrryWt+GG+lrnvPvGg++rknk+sss XP_010523823.1 66 PQEKLNCPRCNSTNTKFCYYNNYSLTQPRYFCRGCRRYWTEGGSLRNVPVGGSSRKNKRSSS 127 6899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-24	65	115	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.3E-33	68	124	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.826	70	124	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	72	108	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MGFQEMINVK PMEHIIHNNI AQPTCTTGTS TVLVNSIANT GPGGCGGNAN ANAAAATTAA 60 EKKARPQEKL NCPRCNSTNT KFCYYNNYSL TQPRYFCRGC RRYWTEGGSL RNVPVGGSSR 120 KNKRSSSAIF PTSSTSATSA LSSSSSLGMT TKLPDLNPPV LFSGQNPKST STQQQKGSSQ 180 DLNLLSFPVM QDGHHHQNMS QFLQMPKIEN SITQPNPNGS LSSLYVSSSP VSALEFLRTG 240 VSSRGFNTFI PGPMIDSNTV LYSSSGFPTI ADYKPSNLSF AGNIGHNNNN GNTRSHETNE 300 DINGSGRVLF PFSEMKELSS TTTQEVGDND DHQQKSQVNS SANAYWSGMF SATGPSW

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MGFQEMINVK PMEHIIHNNI AQPTCTTGTS TVLVNSIANT GPGGCGGNAN ANAAAATTAA  60
EKKARPQEKL NCPRCNSTNT KFCYYNNYSL TQPRYFCRGC RRYWTEGGSL RNVPVGGSSR  120
KNKRSSSAIF PTSSTSATSA LSSSSSLGMT TKLPDLNPPV LFSGQNPKST STQQQKGSSQ  180
DLNLLSFPVM QDGHHHQNMS QFLQMPKIEN SITQPNPNGS LSSLYVSSSP VSALEFLRTG  240
VSSRGFNTFI PGPMIDSNTV LYSSSGFPTI ADYKPSNLSF AGNIGHNNNN GNTRSHETNE  300
DINGSGRVLF PFSEMKELSS TTTQEVGDND DHQQKSQVNS SANAYWSGMF SATGPSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010523823.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010523823.1	0.0	PREDICTED: dof zinc finger protein DOF2.5-like isoform X2
Swissprot	Q9ZPY0	1e-112	DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBL	R0HPY2	1e-128	R0HPY2_9BRAS; Uncharacterized protein
STRING	XP_010523822.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46590.2	1e-100	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]