PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523833.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 418aa    MW: 46648.1 Da    PI: 8.449
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523833.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-12245290454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+++N++f  Lr+++P        +++Ka+ L  Av YI++L
  XP_010523833.1 245 NHIEAERQRREKLNHRFYALRSVVPRV-----SRMDKASLLSDAVSYINEL 290
                     799***********************5.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.6E-3217166IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.49E-13240294No hitNo description
SuperFamilySSF474591.1E-17241302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.117241290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-16245302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-10245290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-15247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MGEKIVSSSS QAATTPQQRL QFIVNAQPEL WCYAINWKIV PDEFAGMCLY WSDGHFRGAN  60
GRNIAHVSTI HSRIVSDIEL FYLISSTKIF PVAGDGLPGR ASVTGTVWIS GDNELRFQNC  120
NRANEAQMHG IRTLVCVPTS DGVLELGSSE MIGYDPHLVR LVKSLFGSDL SDPKPYPRQN  180
PPRFSDRVIS VPRTDITVDG DDSEFPCNAK EYEGDETGSG PALKLDPIPE RRRRKANSTG  240
EQPLNHIEAE RQRREKLNHR FYALRSVVPR VSRMDKASLL SDAVSYINEL KRKIDELESK  300
LKPDNKRVKL EEMTTGLSND QSGIKNASEA LVSKRGYSKV EVDVKIVGDE AVIRVQTENL  360
SYPVAALTAA LRELKLKIRH GSMSSVEELM VQQMVVTVPR GTRRGEEMIK SAIISRLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-24241311477Transcription factor MYC2
5gnj_B1e-24241311477Transcription factor MYC2
5gnj_E1e-24241311477Transcription factor MYC2
5gnj_F1e-24241311477Transcription factor MYC2
5gnj_G1e-24241311477Transcription factor MYC2
5gnj_I1e-24241311477Transcription factor MYC2
5gnj_M1e-24241311477Transcription factor MYC2
5gnj_N1e-24241311477Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1302310PDNKRVKLE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523833.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523833.10.0PREDICTED: transcription factor MYC3-like
TrEMBLA0A061DS371e-113A0A061DS37_THECC; Basic helix-loop-helix DNA-binding family protein
STRINGXP_010523833.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.12e-74bHLH family protein