PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523870.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 482aa    MW: 53637.8 Da    PI: 4.6822
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523870.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.62.2e-08307349955
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     Er  R++i++++  Lr llP++    +k  +Ka+ L +A++Y++ Lq
  XP_010523870.1 307 ERETRHEIKKKMRDLRNLLPNC----NKDDDKASLLDEAIKYMRTLQ 349
                     8999*****************9....888*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.763298348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-11304353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-11305357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.27E-8305351No hitNo description
SMARTSM003530.0027306354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-6306349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0010017Biological Processred or far-red light signaling pathway
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MEEEVHFAPK MISTPLSNFK PKLEDHDYVE LVWENGQILT RGGRRSNVFN RRTTSLLDLY  60
EAEYYDVLKQ NTAYVSNMNL GDPKLPKNQI SDAKSPFSGG VFPEESDKPT KEKIQSSTLF  120
KRQAVEVADD KENAAIEVEP KTEPGLPDHE AVLENEKDRH GSKKGKGVEP MMMVEAGSGV  180
GAMANDMMNR KSLKKESLEF SPPDAQSVAM GRSLDTVGIE NEETESSNLH GWSTELCSAS  240
LSVYSRGTME DHIASSVNRT YSESDGLLTY FSSDLDHESD DVEEEVPART RKTAKRKPSE  300
DFDELSERET RHEIKKKMRD LRNLLPNCNK DDDKASLLDE AIKYMRTLQF QMQFGFMSLA  360
NSFAPPNMML PLGHYSPTVG LGIGTPPFVP PPVPGAAFLL QPGVMPTSYS KFFDPIESSQ  420
QFQRFASMPS SDDSEESSNQ GTVDGASAQL QMPEFSQVKN ENQEMAKHGN DGAPVYSGRR  480
AV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523870.10.0PREDICTED: transcription factor PIF6 isoform X1
RefseqXP_010523871.10.0PREDICTED: transcription factor PIF6 isoform X1
STRINGXP_010523870.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139371725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46970.12e-56phytochrome interacting factor 3-like 1