PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523917.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 327aa    MW: 35701.7 Da    PI: 6.3133
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523917.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.92.5e-34167224259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vk+s+fprsYYrCt+a+C+vkk+vers +dp++v++tYeg+H+h+
  XP_010523917.1 167 EDGYRWRKYGQKAVKNSPFPRSYYRCTTASCNVKKRVERSFTDPSIVVTTYEGQHTHP 224
                     8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381307.2E-1151327IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.803.9E-35151226IPR003657WRKY domain
SuperFamilySSF1182901.7E-29158226IPR003657WRKY domain
PROSITE profilePS5081131.904161226IPR003657WRKY domain
SMARTSM007742.0E-40166225IPR003657WRKY domain
PfamPF031068.8E-27167224IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MENIGVGTSS FADFAQKSLY PSQSVWDFGD LAERNSLGFM ELLGLHQDFN PSSLFDTTSL  60
QAAAEVYSSA PVLPSRAAEQ AASKVESSCS DAVVNPPATP NSASISSASS EAVNEEQVKG  120
EDDEEDGEEQ MQKGSTKKQL KPKKPNQKKQ REPRVAFMTK SEVDHLEDGY RWRKYGQKAV  180
KNSPFPRSYY RCTTASCNVK KRVERSFTDP SIVVTTYEGQ HTHPSPLMAR PAFCGGAAGG  240
FFGSAASAMA GGSFGLPLES TTLSPQFQQL VHYQQQQLST FGVEYLSGYH NVRKNQVCYN  300
PNGAAGLMMK DHGLLQDVVP SHMLKDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-28156226777Probable WRKY transcription factor 4
2lex_A1e-28156226777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523917.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523917.10.0PREDICTED: probable WRKY transcription factor 23
SwissprotO229001e-105WRK23_ARATH; WRKY transcription factor 23
TrEMBLD7LGL41e-113D7LGL4_ARALL; Predicted protein
STRINGXP_010523917.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61522647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.15e-69WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]