PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010523933.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NF-YB

Protein Properties

Length: 162aa MW: 18285.5 Da PI: 6.5111

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010523933.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	167.1	2.2e-52	53	148	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 +eqd +lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wal++lGf++y+++lk+yl+++r +ege XP_010523933.1 53 KEQDMLLPIANVGRIMKNILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALGNLGFDNYADQLKKYLNRFRMIEGE 147 89*******************************************************************************************99 PP NF-YB 97 k 97 + XP_010523933.1 148 R 148 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.7E-50	46	155	IPR009072	Histone-fold
SuperFamily	SSF47113	1.44E-38	55	155	IPR009072	Histone-fold
Pfam	PF00808	5.9E-28	58	122	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.9E-18	86	104	No hit	No description
PROSITE pattern	PS00685	0	89	105	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	3.9E-18	105	123	No hit	No description
PRINTS	PR00615	3.9E-18	124	142	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MAGNPYFQDS FHIYHDFNFG GSSSNSNSKN KISPPPPQAI NIVEEEEEEN VIKEQDMLLP 60 IANVGRIMKN ILPPNAKISK EAKETMQECV SEFISFVTGE ASDKCHKEKR KTVNGDDICW 120 ALGNLGFDNY ADQLKKYLNR FRMIEGERAH SAKGATHHPT NR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	1e-42	52	142	1	91	Transcription factor HapC (Eurofung)
4g92_B	1e-42	52	142	1	91	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010523933.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010523933.1	1e-120	PREDICTED: nuclear transcription factor Y subunit B-5
Swissprot	O82248	3e-67	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	A0A397ZZE8	1e-69	A0A397ZZE8_BRACM; Uncharacterized protein
TrEMBL	M4C8D4	1e-69	M4C8D4_BRARP; Uncharacterized protein
STRING	XP_010523933.1	1e-119	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM255	28	229

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	1e-61	nuclear factor Y, subunit B5

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]