PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010524042.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

LBD

Protein Properties

Length: 243aa MW: 26831.4 Da PI: 6.4318

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010524042.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.8	9.1e-39	9	109	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+k+Cv+apyf++eq ++fa++hk+FGasn +kll++lp+++r +a+ ++ yeA+ar++dPvyG+v++i++lqqq+ +l+++l XP_010524042.1 9 PCGACKFLRRKCVKGCVFAPYFCHEQgVSHFAAIHKVFGASNASKLLSHLPTSDRCEAAITISYEAQARLQDPVYGCVSHIFALQQQVVNLQTQL 103 7***********************77*************************************************************** PP DUF260 95 allkee 100 a lk++ XP_010524042.1 104 AILKQQ 109 9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.149	8	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.3E-36	9	107	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010311	Biological Process	lateral root formation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MTGSGSGSPC GACKFLRRKC VKGCVFAPYF CHEQGVSHFA AIHKVFGASN ASKLLSHLPT 60 SDRCEAAITI SYEAQARLQD PVYGCVSHIF ALQQQVVNLQ TQLAILKQQA ARSMINTPSP 120 SSENPSCYYG NPRPPYHQEH QDLHQAHHLI HQTGNTNQFN LCPTDKNTLP YHQTGLVDAD 180 LSSSNNNNSM ANYYNENNST GEDHASFSSF GESSNYSDME QQWNAFQDAE DLQSAAFGYF 240 SYS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-36	2	103	4	104	LOB family transfactor Ramosa2.1
5ly0_B	9e-36	2	103	4	104	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269\|PubMed:17259263}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010524042.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:15659631, ECO:0000269\|PubMed:17259263}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010524042.1	0.0	PREDICTED: LOB domain-containing protein 29-like
Swissprot	Q9M2J7	5e-91	LBD29_ARATH; LOB domain-containing protein 29
TrEMBL	A0A178VM67	1e-88	A0A178VM67_ARATH; LBD29
STRING	XP_010524042.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	3e-77	lateral organ boundaries-domain 29

Publications ? help Back to Top
Gupta A,Singh M,Laxmi A Interaction between glucose and brassinosteroid during the regulation of lateral root development in Arabidopsis. Plant Physiol., 2015. 168(1): p. 307-20 [PMID:25810094] Porco S, et al. Lateral root emergence in Arabidopsis is dependent on transcription factor LBD29 regulation of auxin influx carrier LAX3. Development, 2016. 143(18): p. 3340-9 [PMID:27578783] Lee K,Seo PJ High-temperature promotion of callus formation requires the BIN2-ARF-LBD axis in Arabidopsis. Planta, 2017. 246(4): p. 797-802 [PMID:28766014] Xu C,Cao H,Xu E,Zhang S,Hu Y Genome-Wide Identification of Arabidopsis LBD29 Target Genes Reveals the Molecular Events behind Auxin-Induced Cell Reprogramming during Callus Formation. Plant Cell Physiol., 2018. 59(4): p. 744-755 [PMID:29121271] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]