PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010524045.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 209aa    MW: 23692.5 Da    PI: 9.6913
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010524045.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000164668123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y C+ C + F++   L  H+++H
  XP_010524045.1 46 YACSFCRREFKSAQALGGHMNVH 68
                    89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.41E-64372No hitNo description
PROSITE profilePS5015711.1154673IPR007087Zinc finger, C2H2
PfamPF139121.8E-54669IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MKRNHFSRDK IQEDDDDNDH HNYFMNSSSE RHHFYEGSIP WPPRNYACSF CRREFKSAQA  60
LGGHMNVHRR DRAKLRQLPS WIFGSSHLCI PNPNPNPSPS PNTCFSSSSS TPHEPYPTQK  120
AQASPVPTRF NISSPKHGDS RKKDKNKGAV PWTREFKNPI DACQAGSGKS TKDQKKKGAA  180
EVVGLELEMS LKDPKHQVLD LELRLGCLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A7e-124168229superman protein
2l1o_A7e-124168229Transcriptional regulator SUPERMAN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010524045.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010524045.11e-156PREDICTED: transcriptional regulator SUPERMAN
STRINGXP_010524045.11e-156(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM95752435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.18e-44zinc finger protein 11