PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010524068.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

G2-like

Protein Properties

Length: 302aa MW: 33737.4 Da PI: 7.4668

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010524068.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.5	2e-30	49	102	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp LH +Fv+ave+LGG++kAtPk +l lm++kgL+++hvkSHLQ+YR+ XP_010524068.1 49 PRLRWTPSLHLAFVHAVERLGGPHKATPKLVLGLMNLKGLSIAHVKSHLQMYRS 102 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.905	45	105	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.4E-28	45	103	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.02E-12	48	103	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-21	49	104	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-7	50	101	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MATFDLNREA VENGEEEEEE EDQTWPSCGN DNEEGRTSTV RQYVRSSMPR LRWTPSLHLA 60 FVHAVERLGG PHKATPKLVL GLMNLKGLSI AHVKSHLQMY RSKKLDESSN AARPGMINGK 120 TMRKSGSLLE MLNYGYIPYG EFRHVYNSEA ILTRELELRS GNQELLMVNP AKGVLADLGV 180 NRLVQPSGLC SGFNGNQWRP VSRSCDGDDS ECKTLPLLEI KKTTGEKRRR DKAQLSEELE 240 VIKQAKIISR EGNLLPELGL SLCQAFGSCR KQKLGEDIKT MLVLSLFPTS SGDQNMTSNI 300 ET

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-16	50	104	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-16	50	104	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-16	50	104	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-16	50	104	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-16	50	104	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-16	50	104	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-16	50	104	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-16	50	104	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-16	50	104	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-16	50	104	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-16	50	104	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-16	50	104	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010524068.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010524068.1	0.0	PREDICTED: uncharacterized protein LOC104802260 isoform X1
STRING	XP_010524068.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42660.1	3e-63	G2-like family protein