PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010524360.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family LBD
Protein Properties Length: 204aa    MW: 22234.5 Da    PI: 8.488
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010524360.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601132e-35121121100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+ +C++apyf  e+ +++fa+vhk+FGasn +k+l +lp ++r da  +l+yeA  r+rdPvyG v+++++lq+q+ +l+ael
  XP_010524360.1  12 PCGACKFLRRKCVGGCIFAPYFDGEEgTSRFAAVHKVFGASNASKMLMKLPSNKRLDASVTLCYEALSRLRDPVYGPVSLLFSLQHQVVKLQAEL 106
                     7*********************888769******************************************************************* PP

          DUF260  95 allkee 100
                     a+++++
  XP_010524360.1 107 AYIQAR 112
                     *99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.51711113IPR004883Lateral organ boundaries, LOB
PfamPF031957.1E-3512110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MNGNMKGSGG GPCGACKFLR RKCVGGCIFA PYFDGEEGTS RFAAVHKVFG ASNASKMLMK  60
LPSNKRLDAS VTLCYEALSR LRDPVYGPVS LLFSLQHQVV KLQAELAYIQ ARLSTFQRFP  120
PQQLHPSLQI PPSLRWSSPS DMTQPSLPQV VVPNSHSPTD PSDFDLWEED PLAIDDRALL  180
QQQVATQLTA MNFPAAKLPA STSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-3391068104LOB family transfactor Ramosa2.1
5ly0_B3e-3391068104LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00313DAPTransfer from AT2G45410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010524360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010524360.11e-150PREDICTED: LOB domain-containing protein 19
SwissprotO221323e-65LBD19_ARATH; LOB domain-containing protein 19
TrEMBLA0A178VSY18e-63A0A178VSY1_ARATH; LBD19
STRINGXP_010524360.11e-150(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.14e-64LOB domain-containing protein 19