PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010524408.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GATA
Protein Properties Length: 246aa    MW: 27121.1 Da    PI: 7.2205
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010524408.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.34.4e-18162196135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  XP_010524408.1 162 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 196
                     *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169926.6E-822246IPR016679Transcription factor, GATA, plant
SMARTSM004015.1E-16156206IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.662156192IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-14159220No hitNo description
Gene3DG3DSA:3.30.50.109.5E-14160194IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.39E-14161208No hitNo description
PfamPF003206.4E-16162196IPR000679Zinc finger, GATA-type
PROSITE patternPS003440162187IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MDVYGLSSPE MIRVDDLLDF SDMNDDIFSS STDATASSSS FPPHNSFAHN FPSASSSSPF  60
LTDFTHDLCV PSDDAAQLEW LSQFVDDSFS DFPANPLGEA MINVRPDSSF PGKPRSTRSR  120
PTAGTWRAMP DSEGRAAGRA KPMKEGGGRN ISGEIAGGAR RCTHCASEKT PQWRTGPLGP  180
KTLCNACGVR YKSGRLVPEY RPAASPTFVL TQHSNSHRKV MELRRQKEEF TRQHHLQLQQ  240
TPFQPQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00415DAPTransfer from AT3G60530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010524408.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893192e-59AC189319.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036H01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010524408.10.0PREDICTED: GATA transcription factor 4
SwissprotO497436e-94GATA4_ARATH; GATA transcription factor 4
TrEMBLV4LH941e-98V4LH94_EUTSA; GATA transcription factor
STRINGXP_010524408.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32032666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.16e-91GATA transcription factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]