PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010524427.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 292aa    MW: 32152.2 Da    PI: 9.37
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010524427.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.3e-18135189256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq  +Lee F++++ ++ +++  LAk+l+L  rqV vWFqNrRa+ k
  XP_010524427.1 135 RKKLRLTKEQSLVLEETFKEHSSLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 189
                     78889************************************************98 PP
2HD-ZIP_I/II124.74.2e-40135224191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rl+keq+ +LEe+F+e++ L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+kev+eLr +l
  XP_010524427.1 135 RKKLRLTKEQSLVLEETFKEHSSLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTDENRRLQKEVAELR-AL 224
                     69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046185.8E-301104IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.601.9E-19117189IPR009057Homeodomain-like
SuperFamilySSF466894.71E-19124192IPR009057Homeodomain-like
PROSITE profilePS5007117.297131191IPR001356Homeobox domain
SMARTSM003895.1E-16133195IPR001356Homeobox domain
PfamPF000466.7E-16135189IPR001356Homeobox domain
CDDcd000861.55E-16135192No hitNo description
PROSITE patternPS000270166189IPR017970Homeobox, conserved site
PfamPF021834.6E-11191225IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.8E-26191234IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGKRDDGLGL SLSLGLISHQ KEPSLRMNLM PMASSPHMQN LNNNPQRSHN PWTHLFQSSD  60
RTSELRLSLM RGIDVNSAPS PATAEEDGGA SSPNSTVSSL SGKRVGGADD IDGERASCSR  120
GGSDEEDGGN GDGSRKKLRL TKEQSLVLEE TFKEHSSLNP KQKLALAKQL NLRPRQVEVW  180
FQNRRARTKL KQTEVDCEYL KRCCENLTDE NRRLQKEVAE LRALKLSPHL YMTMSPPTTL  240
TMCPSCERVA VPSSAAAPHS AGRLDVVGSR PHRLSTPVNS WAGVHLRERP AT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133139SRKKLRL
2183191RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010524427.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010524427.10.0PREDICTED: homeobox-leucine zipper protein HAT3-like
SwissprotP466021e-112HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A067HCG81e-123A0A067HCG8_CITSI; Uncharacterized protein
TrEMBLA0A2H5NNU81e-123A0A2H5NNU8_CITUN; Uncharacterized protein
TrEMBLR0FX191e-122R0FX19_9BRAS; Uncharacterized protein
TrEMBLV4U8Y01e-123V4U8Y0_9ROSI; Uncharacterized protein
STRINGXP_010524427.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25772772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.12e-89homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]