PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010524469.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 267aa    MW: 29141.2 Da    PI: 10.0891
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010524469.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.71.9e-08100125227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt+ C ++     CkyG++C+F+Hg+
  XP_010524469.1 100 KTRMCANYNTAEGCKYGNKCRFSHGE 125
                     9***********************96 PP
2zf-CCCH32.61.4e-10231255227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     k + C++fa+ G C++G+rC+FaHg+
  XP_010524469.1 231 KAKMCKNFAK-GACSFGERCHFAHGE 255
                     6678******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.1083563IPR000571Zinc finger, CCCH-type
SMARTSM003561.63562IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-53762IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-53963IPR000571Zinc finger, CCCH-type
PfamPF146082.74360No hitNo description
Gene3DG3DSA:4.10.1000.107.2E-1196128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-797128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.24998126IPR000571Zinc finger, CCCH-type
SMARTSM003560.0198125IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-5100125IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.45E-11145222IPR004088K Homology domain, type 1
SMARTSM003223.9E-9151221IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.6E-12151220IPR004088K Homology domain, type 1
PROSITE profilePS5008412.202152216IPR004088K Homology domain, type 1
CDDcd001051.98E-8154217No hitNo description
PfamPF000131.1E-7154218IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.1E-14227260IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-8228260IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.671229256IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6229255IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-7235255IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MNDRKRDNGE NELSSHGVSL KKTKQEPESL SDGVRSNLKP CTKFFSTVGC PLGENCHFQH  60
DIHGGYDAVA QMMNLSPSIS PVRKTATTAS IADSSTPRTK TRMCANYNTA EGCKYGNKCR  120
FSHGERQLTG ERLPRRMDAK PPAGPASGFG ASATTKISIE ASLAGIVIGK GGMNSCLICR  180
GTGVKLRVRD HDRDPTLKNV ELKGTFEQIS EASAMVKELI SARAWPERNF KAKMCKNFAK  240
GACSFGERCH FAHGESELRK RLGTVKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010524469.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010524469.10.0PREDICTED: zinc finger CCCH domain-containing protein 31-like
SwissprotQ7F8R07e-83C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A0D2QIF22e-97A0A0D2QIF2_GOSRA; Uncharacterized protein
TrEMBLA0A1U8L4562e-97A0A1U8L456_GOSHI; zinc finger CCCH domain-containing protein 14-like
STRINGXP_010524469.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.17e-69C3H family protein