PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010524482.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 285aa    MW: 31535.1 Da    PI: 6.8754
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010524482.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.7e-09172219355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++ n   r RR++i ++   L +l+P+      kK++ a+ Le+A +YIk Lq
  XP_010524482.1 172 TTQNNTARDRRRKIAEKTRSLEKLMPWE-----KKMDRATLLEEAHKYIKFLQ 219
                     5678889********************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.167169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.13E-7172223No hitNo description
SuperFamilySSF474594.71E-10172227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6173219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-9173225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.8E-7175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MKIEAGYELD SVSGFPPIPS EFDAVEDPGN YPFTSAINPL EALVPFPHSD FSPSAFAFSD  60
LDILRLQPCL RDSILLDSPL SLINRHLAES IQLDQLFHGA GLPDPATSPF LHMPNLHAVD  120
QTTLFSCFPP ALPGVHDEKR RRFTVDVPPP PPPPPVGFTI SPSSASGTPA STTQNNTARD  180
RRRKIAEKTR SLEKLMPWEK KMDRATLLEE AHKYIKFLQA QIAVLRWMPL EAVFSGAGGL  240
NRQQVLQVMA SSSRVQTTLY TRGCCVFSRE QLLSLNMTSP STRNL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137142EKRRRF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010524482.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010524482.10.0PREDICTED: transcription factor bHLH117
STRINGXP_010524482.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133992228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.12e-42bHLH family protein