PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010524574.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

CAMTA

Protein Properties

Length: 924aa MW: 104161 Da PI: 6.935

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010524574.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	163.4	3.9e-51	29	146	2	118
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 l+e k rwl+++ei+a+L n++ + + ++ + pksg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+nptf XP_010524574.1 29 LEEaKGRWLRPNEIHAVLCNHKYFCINVKPMNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDNPTFV 123 455599*************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylevk 118 rrcywlL+++le+ivlvhy+e++ XP_010524574.1 124 RRCYWLLDKTLEHIVLVHYRETQ 146 ******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	79.402	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	5.1E-76	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	3.2E-46	31	144	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	1.68E-11	370	454	IPR014756	Immunoglobulin E-set
CDD	cd00204	4.90E-16	555	665	No hit	No description
Gene3D	G3DSA:1.25.40.20	2.4E-17	556	668	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	2.95E-18	557	674	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.486	564	665	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.301	606	638	IPR002110	Ankyrin repeat
SMART	SM00248	2.0E-5	606	635	IPR002110	Ankyrin repeat
Pfam	PF13637	1.5E-5	608	653	No hit	No description
SuperFamily	SSF52540	3.19E-7	715	820	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	7.181	754	780	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	230	769	791	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.002	792	814	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.871	793	817	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0015	795	814	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	11	870	892	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.334	871	900	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 924 aa Download sequence Send to blast
MDGAGSGRLV GSDIHGFHTL QDLDVPTMLE EAKGRWLRPN EIHAVLCNHK YFCINVKPMN 60 LPKSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGEDNP 120 TFVRRCYWLL DKTLEHIVLV HYRETQEVQT SPATPGNTSS ISDHSSPTCV AGDIDSGVGN 180 ARYVAERNDP IAQNHEIRLH EINTLEWDEL LVPNDDNSPP APTVDDMSYL TQTLQNAANG 240 SAKNGNHLAS YNASTDVQSF PCLGEPSYQN NNLCDPGRFS SQQVHCGVDP GLQNRDPSAA 300 VAGESVDALL NNGLQSQESF GRWMNAFISD SPGSVDDPSH ESTLSPGQDS LTSPAAYHHQ 360 SNMPEQIFSI TDVSPAWAFS TEKTKILVTG FFHDGYQHQA RSNLFCICGE TCVPAEIIQV 420 GVYRCFLPPQ SPAIVNLYLS DDGQKPISQF FSFECRSAAV PEKSITQDNV SSRWEEFEFQ 480 VRLAHLLFTS SNKVNILSSE VSAGSIQEAK KFVNKTSHLL NSWAYLVKSV QGNQLSFEQA 540 KDNLFELTLK NRLKEWLLEK VLEGGKITEY DSKGLGVIHL CAILGYTWSI HLFSWSGLSL 600 NFRDKLGWTA LHWAAYYGRE KMVAALLSAG ARPNLVTDPT KKNVDGCTAA DLAQQKGYDG 660 LAAYLSEKCL VAQFKDMKIA GNISGNLETC KAEASNPGTL TEEEQSLKDT LTAYRTAAEA 720 ASRIQVAFRE HALNVRSKAV QFGSREEEAQ SIIAAMKIQH AFRNHDTRKK MAAAVRIQYR 780 FHTWKMRREF LNMRRQVIKI QAAFRGFQVR RQYRKIVWSV GVLEKAILRW RLKRKGFRGM 840 QVSAITINED EGETEEEDFY KTSQRQAEDR LERSVVRVQA MFRSKKAQQD YRRMKLAHEE 900 AQLEYDGLQE LDDDDDDTSR AMER

Sequence ? help Back to Top

Protein Sequence Length: 924 aa Download sequence Send to blast

MDGAGSGRLV GSDIHGFHTL QDLDVPTMLE EAKGRWLRPN EIHAVLCNHK YFCINVKPMN  60
LPKSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGEDNP  120
TFVRRCYWLL DKTLEHIVLV HYRETQEVQT SPATPGNTSS ISDHSSPTCV AGDIDSGVGN  180
ARYVAERNDP IAQNHEIRLH EINTLEWDEL LVPNDDNSPP APTVDDMSYL TQTLQNAANG  240
SAKNGNHLAS YNASTDVQSF PCLGEPSYQN NNLCDPGRFS SQQVHCGVDP GLQNRDPSAA  300
VAGESVDALL NNGLQSQESF GRWMNAFISD SPGSVDDPSH ESTLSPGQDS LTSPAAYHHQ  360
SNMPEQIFSI TDVSPAWAFS TEKTKILVTG FFHDGYQHQA RSNLFCICGE TCVPAEIIQV  420
GVYRCFLPPQ SPAIVNLYLS DDGQKPISQF FSFECRSAAV PEKSITQDNV SSRWEEFEFQ  480
VRLAHLLFTS SNKVNILSSE VSAGSIQEAK KFVNKTSHLL NSWAYLVKSV QGNQLSFEQA  540
KDNLFELTLK NRLKEWLLEK VLEGGKITEY DSKGLGVIHL CAILGYTWSI HLFSWSGLSL  600
NFRDKLGWTA LHWAAYYGRE KMVAALLSAG ARPNLVTDPT KKNVDGCTAA DLAQQKGYDG  660
LAAYLSEKCL VAQFKDMKIA GNISGNLETC KAEASNPGTL TEEEQSLKDT LTAYRTAAEA  720
ASRIQVAFRE HALNVRSKAV QFGSREEEAQ SIIAAMKIQH AFRNHDTRKK MAAAVRIQYR  780
FHTWKMRREF LNMRRQVIKI QAAFRGFQVR RQYRKIVWSV GVLEKAILRW RLKRKGFRGM  840
QVSAITINED EGETEEEDFY KTSQRQAEDR LERSVVRVQA MFRSKKAQQD YRRMKLAHEE  900
AQLEYDGLQE LDDDDDDTSR AMER

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010524574.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010524574.1	0.0	PREDICTED: calmodulin-binding transcription activator 5 isoform X1
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A178UWV1	0.0	A0A178UWV1_ARATH; Uncharacterized protein
STRING	XP_010524574.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4021	27	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]