PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010524575.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

CAMTA

Protein Properties

Length: 923aa MW: 104090 Da PI: 6.935

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010524575.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	163.4	3.9e-51	29	146	2	118
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 l+e k rwl+++ei+a+L n++ + + ++ + pksg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+nptf XP_010524575.1 29 LEEaKGRWLRPNEIHAVLCNHKYFCINVKPMNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDNPTFV 123 455599*************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylevk 118 rrcywlL+++le+ivlvhy+e++ XP_010524575.1 124 RRCYWLLDKTLEHIVLVHYRETQ 146 ******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	79.402	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	5.1E-76	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	3.2E-46	31	144	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	1.68E-11	369	453	IPR014756	Immunoglobulin E-set
CDD	cd00204	4.94E-16	554	664	No hit	No description
Gene3D	G3DSA:1.25.40.20	2.4E-17	555	667	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	2.95E-18	556	673	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.486	563	664	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.301	605	637	IPR002110	Ankyrin repeat
SMART	SM00248	2.0E-5	605	634	IPR002110	Ankyrin repeat
Pfam	PF13637	1.5E-5	607	652	No hit	No description
SuperFamily	SSF52540	3.19E-7	714	819	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	7.181	753	779	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	230	768	790	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.002	791	813	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.871	792	816	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0015	794	813	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	11	869	891	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.334	870	899	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 923 aa Download sequence Send to blast
MDGAGSGRLV GSDIHGFHTL QDLDVPTMLE EAKGRWLRPN EIHAVLCNHK YFCINVKPMN 60 LPKSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGEDNP 120 TFVRRCYWLL DKTLEHIVLV HYRETQEVQT SPATPGNTSS ISDHSSPTCV AGDIDSGVGN 180 ARYVERNDPI AQNHEIRLHE INTLEWDELL VPNDDNSPPA PTVDDMSYLT QTLQNAANGS 240 AKNGNHLASY NASTDVQSFP CLGEPSYQNN NLCDPGRFSS QQVHCGVDPG LQNRDPSAAV 300 AGESVDALLN NGLQSQESFG RWMNAFISDS PGSVDDPSHE STLSPGQDSL TSPAAYHHQS 360 NMPEQIFSIT DVSPAWAFST EKTKILVTGF FHDGYQHQAR SNLFCICGET CVPAEIIQVG 420 VYRCFLPPQS PAIVNLYLSD DGQKPISQFF SFECRSAAVP EKSITQDNVS SRWEEFEFQV 480 RLAHLLFTSS NKVNILSSEV SAGSIQEAKK FVNKTSHLLN SWAYLVKSVQ GNQLSFEQAK 540 DNLFELTLKN RLKEWLLEKV LEGGKITEYD SKGLGVIHLC AILGYTWSIH LFSWSGLSLN 600 FRDKLGWTAL HWAAYYGREK MVAALLSAGA RPNLVTDPTK KNVDGCTAAD LAQQKGYDGL 660 AAYLSEKCLV AQFKDMKIAG NISGNLETCK AEASNPGTLT EEEQSLKDTL TAYRTAAEAA 720 SRIQVAFREH ALNVRSKAVQ FGSREEEAQS IIAAMKIQHA FRNHDTRKKM AAAVRIQYRF 780 HTWKMRREFL NMRRQVIKIQ AAFRGFQVRR QYRKIVWSVG VLEKAILRWR LKRKGFRGMQ 840 VSAITINEDE GETEEEDFYK TSQRQAEDRL ERSVVRVQAM FRSKKAQQDY RRMKLAHEEA 900 QLEYDGLQEL DDDDDDTSRA MER

Sequence ? help Back to Top

Protein Sequence Length: 923 aa Download sequence Send to blast

MDGAGSGRLV GSDIHGFHTL QDLDVPTMLE EAKGRWLRPN EIHAVLCNHK YFCINVKPMN  60
LPKSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGEDNP  120
TFVRRCYWLL DKTLEHIVLV HYRETQEVQT SPATPGNTSS ISDHSSPTCV AGDIDSGVGN  180
ARYVERNDPI AQNHEIRLHE INTLEWDELL VPNDDNSPPA PTVDDMSYLT QTLQNAANGS  240
AKNGNHLASY NASTDVQSFP CLGEPSYQNN NLCDPGRFSS QQVHCGVDPG LQNRDPSAAV  300
AGESVDALLN NGLQSQESFG RWMNAFISDS PGSVDDPSHE STLSPGQDSL TSPAAYHHQS  360
NMPEQIFSIT DVSPAWAFST EKTKILVTGF FHDGYQHQAR SNLFCICGET CVPAEIIQVG  420
VYRCFLPPQS PAIVNLYLSD DGQKPISQFF SFECRSAAVP EKSITQDNVS SRWEEFEFQV  480
RLAHLLFTSS NKVNILSSEV SAGSIQEAKK FVNKTSHLLN SWAYLVKSVQ GNQLSFEQAK  540
DNLFELTLKN RLKEWLLEKV LEGGKITEYD SKGLGVIHLC AILGYTWSIH LFSWSGLSLN  600
FRDKLGWTAL HWAAYYGREK MVAALLSAGA RPNLVTDPTK KNVDGCTAAD LAQQKGYDGL  660
AAYLSEKCLV AQFKDMKIAG NISGNLETCK AEASNPGTLT EEEQSLKDTL TAYRTAAEAA  720
SRIQVAFREH ALNVRSKAVQ FGSREEEAQS IIAAMKIQHA FRNHDTRKKM AAAVRIQYRF  780
HTWKMRREFL NMRRQVIKIQ AAFRGFQVRR QYRKIVWSVG VLEKAILRWR LKRKGFRGMQ  840
VSAITINEDE GETEEEDFYK TSQRQAEDRL ERSVVRVQAM FRSKKAQQDY RRMKLAHEEA  900
QLEYDGLQEL DDDDDDTSRA MER

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010524575.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010524575.1	0.0	PREDICTED: calmodulin-binding transcription activator 5 isoform X2
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A178UWV1	0.0	A0A178UWV1_ARATH; Uncharacterized protein
STRING	XP_010524574.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]