PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010524740.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 408aa    MW: 44964.4 Da    PI: 7.5359
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010524740.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.94.8e-34241299159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK vk+s++prsYYrCt+agC vkk+vers++dp++v +tYeg+H+h+
  XP_010524740.1 241 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSDDPSIVMTTYEGQHTHP 299
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.1E-35226301IPR003657WRKY domain
SuperFamilySSF1182904.32E-30234301IPR003657WRKY domain
PROSITE profilePS5081133.006236301IPR003657WRKY domain
SMARTSM007743.3E-41241300IPR003657WRKY domain
PfamPF031061.0E-27242299IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MEKKREHDHH LLQVRLHRET SNKNTAAKIE HCHGQIQTAQ PAISSMANLL YSSSDQELAA  60
SMGLSSIFFD TASYSYSCSD DFVVHASSNS NSFMDLLRQD HHHFTPSSSS SSSLFDSFPL  120
HNNPFFTDLP SYHQPQPSQV PATAAAASPG STTATAAVES SEVLNTTAPA SPNTSSVSSS  180
SNEAGNENNT VKASGSVTDQ EEQDQQERKG TKQQLKAKKN NQKKPREPRF AFLTKSDIDN  240
LDDGYRWRKY GQKAVKNSPY PRSYYRCTTA GCGVKKRVER SSDDPSIVMT TYEGQHTHPF  300
PITPRGHIGI LMSPSDITAT SSFAAPQPRC LLTQQQAQQL MLQPYMYSSR SSADHHSGVF  360
VNTGSVFNLG EEKASSSSSL RDHGLLQDII PSHIRSDSNQ RKEEEKKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-272343011077Probable WRKY transcription factor 4
2lex_A2e-272343011077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010524740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010524740.10.0PREDICTED: probable WRKY transcription factor 48
SwissprotQ9FGZ44e-95WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBLA0A3P6F0081e-104A0A3P6F008_BRAOL; Uncharacterized protein
STRINGXP_010524740.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56242648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.11e-78WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]