PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010524751.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

C3H

Protein Properties

Length: 455aa MW: 48494.4 Da PI: 8.2689

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010524751.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	39.2	1.2e-12	50	75	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG C yG+rC+F+H++ XP_010524751.1 50 DQPDCIYYLRTGACGYGSRCRFNHPQ 75 6899********************97 PP
2	zf-CCCH	39.7	8.3e-13	98	122	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC++f+rtGtCk+G++Ck++H++ XP_010524751.1 98 QPLCQHFMRTGTCKFGASCKYHHPR 122 79*********************96 PP
3	zf-CCCH	39.9	6.8e-13	143	167	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++rtG+Ck+G++C+F+H+ XP_010524751.1 143 GEKECSYYMRTGQCKFGATCRFHHP 167 7899********************9 PP
4	zf-CCCH	41.6	2.1e-13	301	326	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++f+rtG Ck+G++C+F+H+ XP_010524751.1 301 PGQPECQYFMRTGDCKFGSSCRFHHP 326 5789*********************9 PP
5	zf-CCCH	30.2	7.6e-10	349	373	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +lC +f + G+Ck+G++C+F H++ XP_010524751.1 349 APLCTHFTQHGFCKFGPSCRFDHSM 373 68*********************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.784	48	76	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.0E-5	48	75	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.7E-10	50	75	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.88E-6	51	76	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.7E-5	54	75	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.192	95	123	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	8.4E-7	95	122	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.09E-6	98	123	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.7E-10	98	122	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.5E-5	100	122	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.446	141	169	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.06E-6	142	168	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.3E-10	143	167	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.0E-6	143	168	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.3E-4	147	166	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.183	300	328	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.5E-7	300	327	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-10	302	326	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.62E-6	304	329	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.5E-5	306	325	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.723	346	374	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.0E-6	346	373	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.15E-6	349	377	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.6E-7	349	372	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.3E-6	351	374	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MERYGRAGEE GSRSDPSPEW SAPGGVTGVE ASMWRLGLQT VGESYPERPD QPDCIYYLRT 60 GACGYGSRCR FNHPQDRGAV IGAAARGDAG EFPERVGQPL CQHFMRTGTC KFGASCKYHH 120 PRQGSSSSST VTLNYMGYPL YPGEKECSYY MRTGQCKFGA TCRFHHPLAP DVQVLSPPPP 180 LPPTAQAIYP TVQSQSVPSS QQYGVVMAQP PLLPGSYVQS PYGPMVLPPG MVPYSGWNPY 240 AASVSAIPSP GSQPSVGSSS VYGIRPLSPS GPAHAAPYQS RPSSVDPSST FPKEQLFPQR 300 PGQPECQYFM RTGDCKFGSS CRFHHPLDAV SLKTSVVIGP VGLPLRPGAP LCTHFTQHGF 360 CKFGPSCRFD HSMDSLSYTP SASPLADMAA APYHIGSSLG TLAPSPISSS SKEIVSPKTR 420 TSDSETVVPA TVSSRNGGLS RPELSGSSLE PRSSS

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MERYGRAGEE GSRSDPSPEW SAPGGVTGVE ASMWRLGLQT VGESYPERPD QPDCIYYLRT  60
GACGYGSRCR FNHPQDRGAV IGAAARGDAG EFPERVGQPL CQHFMRTGTC KFGASCKYHH  120
PRQGSSSSST VTLNYMGYPL YPGEKECSYY MRTGQCKFGA TCRFHHPLAP DVQVLSPPPP  180
LPPTAQAIYP TVQSQSVPSS QQYGVVMAQP PLLPGSYVQS PYGPMVLPPG MVPYSGWNPY  240
AASVSAIPSP GSQPSVGSSS VYGIRPLSPS GPAHAAPYQS RPSSVDPSST FPKEQLFPQR  300
PGQPECQYFM RTGDCKFGSS CRFHHPLDAV SLKTSVVIGP VGLPLRPGAP LCTHFTQHGF  360
CKFGPSCRFD HSMDSLSYTP SASPLADMAA APYHIGSSLG TLAPSPISSS SKEIVSPKTR  420
TSDSETVVPA TVSSRNGGLS RPELSGSSLE PRSSS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010524751.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010524751.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 34-like
Swissprot	Q6NPN3	0.0	C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBL	A0A1J3IQY4	0.0	A0A1J3IQY4_NOCCA; Zinc finger CCCH domain-containing protein 58
STRING	XP_010524751.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1779	27	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	1e-166	C3H family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]