PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010524779.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

FAR1

Protein Properties

Length: 782aa MW: 89922.6 Da PI: 7.9639

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010524779.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.8	2.4e-20	61	135	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYn+YA+++GF+vr+ + ++s+++g++ +r+fvCskeg++ + +rtgC a ++v++ ++gkw+++++++eHnHel XP_010524779.1 61 EFYNSYATRTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGFQLN--------------SRTGCSAFIRVRRCDTGKWVLDQIQKEHNHEL 135 6*************************************876..............589*************************98 PP
2	FAR1	67	5e-21	222	298	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++Y++YA+ vGF+vr+ + +sk +g+it+r+fvCskeg+++++ r+gC a +++k+++++ w v++l+++HnHel p XP_010524779.1 222 QYYQAYAEVVGFRVRIGQLFRSKADGSITSRRFVCSKEGFQHPS--------------RMGCGAFMRIKRQDSEGWIVDRLNKDHNHELEP 298 69************************************9994..............799*************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.5E-16	61	135	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.6E-16	222	298	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.6E-27	394	487	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.076	666	704	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.2E-8	678	701	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.5E-8	679	706	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 782 aa Download sequence Send to blast
MESADTEPAS LNCGNSMVVK AYPLGMVRVM NNNNGIGEEE GDSGVEPYVG LEFDSADEAR 60 EFYNSYATRT GFKVRTGQLY RSRTDGTVSS RRFVCSKEGF QLNSRTGCSA FIRVRRCDTG 120 KWVLDQIQKE HNHELGGQVE ETPRLPVVSK RHPAPIKLAL SVPHRPKMKV IDESDKARSC 180 PSGVISFKRF KGAGDGGDVQ TQPNAAEPYT GLEFSSANEA CQYYQAYAEV VGFRVRIGQL 240 FRSKADGSIT SRRFVCSKEG FQHPSRMGCG AFMRIKRQDS EGWIVDRLNK DHNHELEPGK 300 KNVGMKRITE DVTGGLDSVD LIELNVFSNH IKKTRENMIG KEWYSVLLEY FQTRQTEDMG 360 FFYALELDSS GSCMSIFWAD SRARFACSQF GDAVVFDTSY RKGNYSVPFA TFVGFNHHRQ 420 PVLLGCALIS DISKETFTWL FQTWLHAMSS RRPKSIVADQ DLAIQQAVAQ VFPGTHHRYS 480 VWQIKANERE NLRPFPNEFK YEYDKCIYQT QTTVEFDTIW NALVNKYGLR DNMWLREMYE 540 KRDNWVPAYL RGTFFGGIPV NGNVEPFFGT SLNSLTPLRE FISRYEQGLE QRREEERKED 600 FNSYNLQPFL QTKEPVEEQC RRLYTLTIFR IFQNELVQSY NYLGLKTYEE GSISRFLVKK 660 CGNENEKHAV TFSGLNINTS CSCQMFEYEG LLCRHILKVF NLLDIRELPS QYILHRWTKN 720 AEFGFVRDVE SGVSSQDLKT LMVWSLREAA TKYIEFGTSS LDKYKLAYEI MREGGKKLCW 780 QR

Sequence ? help Back to Top

Protein Sequence Length: 782 aa Download sequence Send to blast

MESADTEPAS LNCGNSMVVK AYPLGMVRVM NNNNGIGEEE GDSGVEPYVG LEFDSADEAR  60
EFYNSYATRT GFKVRTGQLY RSRTDGTVSS RRFVCSKEGF QLNSRTGCSA FIRVRRCDTG  120
KWVLDQIQKE HNHELGGQVE ETPRLPVVSK RHPAPIKLAL SVPHRPKMKV IDESDKARSC  180
PSGVISFKRF KGAGDGGDVQ TQPNAAEPYT GLEFSSANEA CQYYQAYAEV VGFRVRIGQL  240
FRSKADGSIT SRRFVCSKEG FQHPSRMGCG AFMRIKRQDS EGWIVDRLNK DHNHELEPGK  300
KNVGMKRITE DVTGGLDSVD LIELNVFSNH IKKTRENMIG KEWYSVLLEY FQTRQTEDMG  360
FFYALELDSS GSCMSIFWAD SRARFACSQF GDAVVFDTSY RKGNYSVPFA TFVGFNHHRQ  420
PVLLGCALIS DISKETFTWL FQTWLHAMSS RRPKSIVADQ DLAIQQAVAQ VFPGTHHRYS  480
VWQIKANERE NLRPFPNEFK YEYDKCIYQT QTTVEFDTIW NALVNKYGLR DNMWLREMYE  540
KRDNWVPAYL RGTFFGGIPV NGNVEPFFGT SLNSLTPLRE FISRYEQGLE QRREEERKED  600
FNSYNLQPFL QTKEPVEEQC RRLYTLTIFR IFQNELVQSY NYLGLKTYEE GSISRFLVKK  660
CGNENEKHAV TFSGLNINTS CSCQMFEYEG LLCRHILKVF NLLDIRELPS QYILHRWTKN  720
AEFGFVRDVE SGVSSQDLKT LMVWSLREAA TKYIEFGTSS LDKYKLAYEI MREGGKKLCW  780
QR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010524779.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010524779.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	R0HJN8	0.0	R0HJN8_9BRAS; Uncharacterized protein
STRING	XP_010524779.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5730	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]