PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010524780.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family FAR1
Protein Properties Length: 766aa    MW: 88315 Da    PI: 8.2746
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010524780.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.82.4e-2045119189
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                     +fYn+YA+++GF+vr+ + ++s+++g++ +r+fvCskeg++ +              +rtgC a ++v++ ++gkw+++++++eHnHel
  XP_010524780.1  45 EFYNSYATRTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGFQLN--------------SRTGCSAFIRVRRCDTGKWVLDQIQKEHNHEL 119
                     6***************************************876..............589***************************98 PP
2FAR1675e-21206282191
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     ++Y++YA+ vGF+vr+ +  +sk +g+it+r+fvCskeg+++++              r+gC a +++k+++++ w v++l+++HnHel p
  XP_010524780.1 206 QYYQAYAEVVGFRVRIGQLFRSKADGSITSRRFVCSKEGFQHPS--------------RMGCGAFMRIKRQDSEGWIVDRLNKDHNHELEP 282
                     69**************************************9994..............799***************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.3E-1645119IPR004330FAR1 DNA binding domain
PfamPF031011.6E-16206282IPR004330FAR1 DNA binding domain
PfamPF105513.5E-27378471IPR018289MULE transposase domain
PROSITE profilePS5096610.076650688IPR007527Zinc finger, SWIM-type
PfamPF044344.1E-8662685IPR007527Zinc finger, SWIM-type
SMARTSM005751.5E-8663690IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 766 aa     Download sequence    Send to blast
MVVKAYPLGM VRVMNNNNGI GEEEGDSGVE PYVGLEFDSA DEAREFYNSY ATRTGFKVRT  60
GQLYRSRTDG TVSSRRFVCS KEGFQLNSRT GCSAFIRVRR CDTGKWVLDQ IQKEHNHELG  120
GQVEETPRLP VVSKRHPAPI KLALSVPHRP KMKVIDESDK ARSCPSGVIS FKRFKGAGDG  180
GDVQTQPNAA EPYTGLEFSS ANEACQYYQA YAEVVGFRVR IGQLFRSKAD GSITSRRFVC  240
SKEGFQHPSR MGCGAFMRIK RQDSEGWIVD RLNKDHNHEL EPGKKNVGMK RITEDVTGGL  300
DSVDLIELNV FSNHIKKTRE NMIGKEWYSV LLEYFQTRQT EDMGFFYALE LDSSGSCMSI  360
FWADSRARFA CSQFGDAVVF DTSYRKGNYS VPFATFVGFN HHRQPVLLGC ALISDISKET  420
FTWLFQTWLH AMSSRRPKSI VADQDLAIQQ AVAQVFPGTH HRYSVWQIKA NERENLRPFP  480
NEFKYEYDKC IYQTQTTVEF DTIWNALVNK YGLRDNMWLR EMYEKRDNWV PAYLRGTFFG  540
GIPVNGNVEP FFGTSLNSLT PLREFISRYE QGLEQRREEE RKEDFNSYNL QPFLQTKEPV  600
EEQCRRLYTL TIFRIFQNEL VQSYNYLGLK TYEEGSISRF LVKKCGNENE KHAVTFSGLN  660
INTSCSCQMF EYEGLLCRHI LKVFNLLDIR ELPSQYILHR WTKNAEFGFV RDVESGVSSQ  720
DLKTLMVWSL REAATKYIEF GTSSLDKYKL AYEIMREGGK KLCWQR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010524780.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010524780.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X2
RefseqXP_010524782.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X2
SwissprotQ9M8J30.0FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBLV4LFZ70.0V4LFZ7_EUTSA; Uncharacterized protein
STRINGXP_010524779.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1-related sequence 7
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]