PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010524910.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

LBD

Protein Properties

Length: 240aa MW: 26519.4 Da PI: 6.6012

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010524910.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	120.1	1.3e-37	10	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+k+Cv+apyf++eq +++fa++hk+FGasn +kll +lp+++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+++l XP_010524910.1 10 PCGACKFLRRKCVKGCVFAPYFCHEQgASHFAAIHKVFGASNASKLLCHLPTSDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVFNLQTQL 104 7***********************89*************************************************************** PP DUF260 95 allkee 100 a lk++ XP_010524910.1 105 AILKQQ 110 9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.875	9	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.1E-35	10	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MAGGSGSGSP CGACKFLRRK CVKGCVFAPY FCHEQGASHF AAIHKVFGAS NASKLLCHLP 60 TSDRCEAAIT ISYEAQARLQ DPIYGCVSHI FALQQQVFNL QTQLAILKQQ AAQSMIDTLS 120 PSLENPNCYY ENSRPPSHLH QEHRDLHQTH QQIHQTANSN HQIDLSPTDN ITMSYIQQGI 180 VVGDLSSSNN NNMENYYNEN KSSGEAHTSI SSFGESSQQW MAFHDAEDLH SATFGHLLYS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-35	6	104	7	104	LOB family transfactor Ramosa2.1
5ly0_B	2e-35	6	104	7	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269\|PubMed:17259263}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010524910.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:15659631, ECO:0000269\|PubMed:17259263}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010524910.1	0.0	PREDICTED: LOB domain-containing protein 29-like
Swissprot	Q9M2J7	3e-78	LBD29_ARATH; LOB domain-containing protein 29
TrEMBL	R0FTQ3	2e-76	R0FTQ3_9BRAS; Uncharacterized protein
STRING	XP_010524910.1	1e-180	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	2e-79	lateral organ boundaries-domain 29

Publications ? help Back to Top
Gupta A,Singh M,Laxmi A Interaction between glucose and brassinosteroid during the regulation of lateral root development in Arabidopsis. Plant Physiol., 2015. 168(1): p. 307-20 [PMID:25810094] Porco S, et al. Lateral root emergence in Arabidopsis is dependent on transcription factor LBD29 regulation of auxin influx carrier LAX3. Development, 2016. 143(18): p. 3340-9 [PMID:27578783] Lee K,Seo PJ High-temperature promotion of callus formation requires the BIN2-ARF-LBD axis in Arabidopsis. Planta, 2017. 246(4): p. 797-802 [PMID:28766014] Xu C,Cao H,Xu E,Zhang S,Hu Y Genome-Wide Identification of Arabidopsis LBD29 Target Genes Reveals the Molecular Events behind Auxin-Induced Cell Reprogramming during Callus Formation. Plant Cell Physiol., 2018. 59(4): p. 744-755 [PMID:29121271] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]