PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010524964.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 324aa MW: 36196.9 Da PI: 6.2894

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010524964.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.9	1.1e-54	20	147	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdee+v++yLk+k+ ++k+++ +i e+d++k+ePwdLp+k+k +eke yfF++rd+ky+tg r+nrat sg+Wk tgkdke+++ XP_010524964.1 20 LPPGFRFHPTDEEIVTHYLKEKAIDSKFTA-AAIGEADLNKCEPWDLPSKAKMGEKEFYFFCQRDRKYPTGIRTNRATGSGFWKGTGKDKEIYKG 113 79***********************999.78***********99999*************************************9 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 kg lvg+kktLvfy+grap+gekt+Wvmheyrle XP_010524964.1 114 KGCLVGMKKTLVFYRGRAPRGEKTNWVMHEYRLE 147 ******************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.75E-62	16	172	IPR003441	NAC domain
PROSITE profile	PS51005	57.532	20	171	IPR003441	NAC domain
Pfam	PF02365	7.6E-29	21	146	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MAVVEEGIVV SHGGEELVDL PPGFRFHPTD EEIVTHYLKE KAIDSKFTAA AIGEADLNKC 60 EPWDLPSKAK MGEKEFYFFC QRDRKYPTGI RTNRATGSGF WKGTGKDKEI YKGKGCLVGM 120 KKTLVFYRGR APRGEKTNWV MHEYRLEGKY AYHNLPNSPM VEWVVCRVFH KNTTNPIMIK 180 NPMEDLPRID SLENIDHLLD FSSLPPLMDP SFPCQPGPSF SGGDFKPANR KPIHNDDDTT 240 YYFPYRSMPG PGPGSGSGST FHGPNNDKGM IKLEHSLNSD VEATETPGIS SSCPETKHDV 300 TAAAMMNGSK SYDDLGDLGI LWDY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-51	18	174	15	168	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-51	18	174	15	168	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-51	18	174	15	168	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-51	18	174	15	168	NO APICAL MERISTEM PROTEIN
3swm_A	2e-51	18	174	18	171	NAC domain-containing protein 19
3swm_B	2e-51	18	174	18	171	NAC domain-containing protein 19
3swm_C	2e-51	18	174	18	171	NAC domain-containing protein 19
3swm_D	2e-51	18	174	18	171	NAC domain-containing protein 19
3swp_A	2e-51	18	174	18	171	NAC domain-containing protein 19
3swp_B	2e-51	18	174	18	171	NAC domain-containing protein 19
3swp_C	2e-51	18	174	18	171	NAC domain-containing protein 19
3swp_D	2e-51	18	174	18	171	NAC domain-containing protein 19
4dul_A	2e-51	18	174	15	168	NAC domain-containing protein 19
4dul_B	2e-51	18	174	15	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010524964.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010524964.1	0.0	PREDICTED: NAC domain-containing protein 92-like
Swissprot	Q9FK44	1e-146	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A1J3DX94	1e-152	A0A1J3DX94_NOCCA; Uncharacterized protein
STRING	XP_010524964.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2269	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	1e-146	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]