PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010524965.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

G2-like

Protein Properties

Length: 383aa MW: 43716.9 Da PI: 6.7614

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010524965.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.3	1.5e-32	29	83	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerFv+av+qL G++kAtPk+i+++m+v+gLtl+h+kSHLQkYRl XP_010524965.1 29 KPRLKWTPDLHERFVKAVNQLDGADKATPKAIMKVMGVPGLTLYHLKSHLQKYRL 83 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.032	26	86	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-31	27	84	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.91E-17	28	84	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-23	29	84	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-8	31	82	IPR001005	SANT/Myb domain
Pfam	PF14379	1.2E-19	131	175	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MPIPYERHPF LRGVNDPGDS GLILSTDAKP RLKWTPDLHE RFVKAVNQLD GADKATPKAI 60 MKVMGVPGLT LYHLKSHLQK YRLSKNLNGQ ANYQKYQKYR LVAMAEEKSH DANEIHTESF 120 SIGQPTEKNL PISEALQMQV EVQQRLHEQL ERHLQLRIEA HGKYLQAVLE KAHETLGKQN 180 LGTDGIEAAK VQLSELASKV SAEYSHTTFQ EPKELQSLHP QQMETYPSVC SLDSSLTSRE 240 RNQTIPKIVE NRLGLRPYHG DSKSEQKEIS EQQLFQRLEL AWSEGQRETR TYFSTMVNDT 300 EARISSSERS LGNLSIGIGL YGQKGQENTG YTEERTKKDE DCKFETRNQK GMDSTTELDL 360 NTHGENYDTA RPKQFDLNGF SWN

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MPIPYERHPF LRGVNDPGDS GLILSTDAKP RLKWTPDLHE RFVKAVNQLD GADKATPKAI  60
MKVMGVPGLT LYHLKSHLQK YRLSKNLNGQ ANYQKYQKYR LVAMAEEKSH DANEIHTESF  120
SIGQPTEKNL PISEALQMQV EVQQRLHEQL ERHLQLRIEA HGKYLQAVLE KAHETLGKQN  180
LGTDGIEAAK VQLSELASKV SAEYSHTTFQ EPKELQSLHP QQMETYPSVC SLDSSLTSRE  240
RNQTIPKIVE NRLGLRPYHG DSKSEQKEIS EQQLFQRLEL AWSEGQRETR TYFSTMVNDT  300
EARISSSERS LGNLSIGIGL YGQKGQENTG YTEERTKKDE DCKFETRNQK GMDSTTELDL  360
NTHGENYDTA RPKQFDLNGF SWN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-20	28	85	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-20	28	85	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-20	28	85	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-20	28	85	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-20	28	85	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-20	28	85	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-20	28	85	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-20	28	85	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010524965.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019056726.1	0.0	PREDICTED: myb-related protein 2-like isoform X2
Swissprot	Q9SQQ9	0.0	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A178VA50	0.0	A0A178VA50_ARATH; MYR2
STRING	XP_010524965.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3336	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	0.0	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]