PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010525118.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

TCP

Protein Properties

Length: 193aa MW: 21631.2 Da PI: 7.5647

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010525118.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	104.2	2.1e-32	50	127	2	78
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaess 78 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+d++sk+++WLl +ak +i++l+ ++ s+++++ ++++ XP_010525118.1 50 FGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQDRLGVDQPSKAVDWLLHAAKDEIDALPPLPISPENFAlLNHHH 127 689*************************************************************99999888633332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.8E-30	52	132	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	30.958	52	110	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MSTATWKEEN GDVSAADGRT VITKGPPPAS SSWSWLRSKD PRIVRVSRAF GGKDRHSKVC 60 TLRGLRDRRV RLSVPTAIQL YDLQDRLGVD QPSKAVDWLL HAAKDEIDAL PPLPISPENF 120 ALLNHHHRPF LSLNPGLGPS QEPGQLGDEG RERGREKEDD EGGKNDAVLG TINCIDEREN 180 SVIERECRER RKW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	7e-19	57	111	1	55	Putative transcription factor PCF6
5zkt_B	7e-19	57	111	1	55	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Binds to the 3'-ACC-5' repeats in the light-responsive promoter (LRP) of psbD, and activates its transcription. Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:11161017, ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010525118.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010525118.1	1e-139	PREDICTED: transcription factor TCP13
Swissprot	Q9S7W5	7e-66	TCP13_ARATH; Transcription factor TCP13
TrEMBL	R0HZ82	1e-64	R0HZ82_9BRAS; Uncharacterized protein
STRING	XP_010525118.1	1e-139	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9134	26	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02150.1	5e-65	plastid transcription factor 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Yamburenko MV,Zubo YO,Börner T Abscisic acid affects transcription of chloroplast genes via protein phosphatase 2C-dependent activation of nuclear genes: repression by guanosine-3'-5'-bisdiphosphate and activation by sigma factor 5. Plant J., 2015. 82(6): p. 1030-41 [PMID:25976841] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]