PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010525265.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 233aa    MW: 26408.5 Da    PI: 4.5555
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010525265.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.62.8e-134194248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqkyl 48
                     ++W+t+E++ll++avk++G ++W+++a +++        +  t+ +ck+++++++
   XP_010525265.1 41 QSWSTWEELLLACAVKRHGFHDWDSVAMEVQsrsslprfL-TTAQNCKHKYRDLK 94
                     78*******************************9999975.49********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.7053598IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.3E-73595IPR009057Homeodomain-like
SuperFamilySSF466892.34E-73596IPR009057Homeodomain-like
SMARTSM007173.2E-83996IPR001005SANT/Myb domain
PfamPF002496.2E-134194IPR001005SANT/Myb domain
CDDcd001678.08E-94294No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSGFDGETFT KSTSVKYDII NYSCRDNHTG DDNIDQRKHS QSWSTWEELL LACAVKRHGF  60
HDWDSVAMEV QSRSSLPRFL TTAQNCKHKY RDLKRRFEDD GVGDNETEDG DDKADNIPWL  120
NQLRGLRVAE LRRDLQRYDV SILSLESKVK KLEEERDRSV GCQKPDLDDD SKGERSENDV  180
TEPARPNTVM AEEKESDREN GSINESNSTA SGGKLAGDGD ETSRAREDSG NPD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010525265.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010525265.11e-172PREDICTED: uncharacterized protein LOC104803086, partial
TrEMBLA0A1J3F8262e-69A0A1J3F826_NOCCA; Uncharacterized protein
TrEMBLA0A1J3HDA42e-69A0A1J3HDA4_NOCCA; Uncharacterized protein
TrEMBLA0A1J3K5562e-69A0A1J3K556_NOCCA; Uncharacterized protein
STRINGXP_010525265.11e-171(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.11e-53DNA-binding bromodomain-containing protein