PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010525275.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 495aa MW: 53469.6 Da PI: 6.8921

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010525275.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.3	3.2e-09	311	358	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_010525275.1 311 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 358 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.10E-10	305	362	No hit	No description
SuperFamily	SSF47459	7.98E-17	305	375	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.663	307	357	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.0E-17	307	375	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.4E-6	311	358	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-10	313	363	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence Send to blast
MENELFMNTG LPSPAPEMAM HFEPPSSSSA VMNWPSMSSS MDIQQPDRHL GRNPTQDCFF 60 WEKSTEQSIF DSALSSLVSS PTASSSNFSG GGDSFIIREL IGKLGNIGNS SGEIYGTPAS 120 NNGSCYATPM SSPPPPPRRS SPIMVANTTP LAEFSGDPGF AERAARFSCF GSRSFNGRTT 180 SEGAGNNNIA NGSAAITGAN GKLPRVSSSP ALKALTSQIC NTPGGNEDQC PKVTGEFSRK 240 RKSVPRGKAK ESSASPSANS LKGVEGNEDS GAKRRKNSEE NGKKTTNNTK PPEAPKDYIH 300 VRARRGQATD SHSLAERVRR EKISERMKLL QDLVPGCNKV TGKALMLDEI INYVQSLQRQ 360 VEFLSMKLAT VNTRLDVNVD ALVSKDMIPP THDEQVIQLD DATQAFLGHQ HNLQLHPNIS 420 SGCAIDPFDT SALPRSFTSH APTLDQFTDS IPQCPTFCED DLHSLVQMGF AQTSVQLQPQ 480 NFQSSNQTSH MKLEL

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence Send to blast

MENELFMNTG LPSPAPEMAM HFEPPSSSSA VMNWPSMSSS MDIQQPDRHL GRNPTQDCFF  60
WEKSTEQSIF DSALSSLVSS PTASSSNFSG GGDSFIIREL IGKLGNIGNS SGEIYGTPAS  120
NNGSCYATPM SSPPPPPRRS SPIMVANTTP LAEFSGDPGF AERAARFSCF GSRSFNGRTT  180
SEGAGNNNIA NGSAAITGAN GKLPRVSSSP ALKALTSQIC NTPGGNEDQC PKVTGEFSRK  240
RKSVPRGKAK ESSASPSANS LKGVEGNEDS GAKRRKNSEE NGKKTTNNTK PPEAPKDYIH  300
VRARRGQATD SHSLAERVRR EKISERMKLL QDLVPGCNKV TGKALMLDEI INYVQSLQRQ  360
VEFLSMKLAT VNTRLDVNVD ALVSKDMIPP THDEQVIQLD DATQAFLGHQ HNLQLHPNIS  420
SGCAIDPFDT SALPRSFTSH APTLDQFTDS IPQCPTFCED DLHSLVQMGF AQTSVQLQPQ  480
NFQSSNQTSH MKLEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	237	242	SRKRKS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00660	PBM	Transfer from Pp3c6_9520	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010525275.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488595	4e-77	AF488595.1 Arabidopsis thaliana clone bHLH062 putative bHLH transcription factor mRNA, complete cds.
GenBank	AK175369	4e-77	AK175369.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH062), complete cds, clone: RAFL21-80-E17.
GenBank	AK175496	4e-77	AK175496.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH062), complete cds, clone: RAFL21-92-E09.
GenBank	AK176563	4e-77	AK176563.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH062), complete cds, clone: RAFL25-09-B02.
GenBank	AK176663	4e-77	AK176663.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH062), complete cds, clone: RAFL25-20-F07.
GenBank	BT026497	4e-77	BT026497.1 Arabidopsis thaliana At3g07340 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010525275.1	0.0	PREDICTED: transcription factor bHLH62-like
Swissprot	Q9SRT2	0.0	BH062_ARATH; Transcription factor bHLH62
TrEMBL	A0A0D3DBT1	1e-180	A0A0D3DBT1_BRAOL; Uncharacterized protein
STRING	XP_010525275.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2332	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-160	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]