PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010525286.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 263aa    MW: 29454.8 Da    PI: 9.7962
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010525286.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.7e-0579101123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y C+ C+k Fs++  L  H++ H
  XP_010525286.1  79 YACNFCKKEFSTSQALGGHQNAH 101
                     89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.19E-776107No hitNo description
Gene3DG3DSA:3.30.160.601.3E-577106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139128.6E-678103IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.98879106IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MAIHVVSVSS SSGSSATKPG TVTEKLAKKL MDQERETVNP KPGFSILSRD KIKNLRFGWE  60
EEQAQEEGGN SSYLRSRVYA CNFCKKEFST SQALGGHQNA HKQEREWEKK RKQMESEYPT  120
LAFLHPYLNR SPFSGGSWIS SLSYDNHLGS RFDPIFQKPV FYHPTNSSIG HGGPSVTPRV  180
PPANNNRVFA GKDLFSNDGL PKNFILRPSK RLMIGDIIDY SRNFISTVGE SGSSDKAHQA  240
DNKEDVRSRH DGSSKDWGRD LSL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010525286.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010525286.10.0PREDICTED: zinc finger protein 8-like
STRINGXP_010525286.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63631842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.14e-20C2H2 family protein