PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010525292.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

WOX

Protein Properties

Length: 253aa MW: 27745.8 Da PI: 6.3387

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010525292.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.6	6.5e-06	29	65	2	37
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl 37 r+R+++++eq+ +Le+ F++ +p ++e ++ k l XP_010525292.1 29 RSRWSPKPEQILILESIFNSgMVNPPKDETVRIRKML 65 89***************99***99999998877 PP
2	Wus_type_Homeobox	60.6	3.6e-20	28	73	2	47
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkied 47 +r+RW+P+peQi iLe++++sG+++P+k+e+ ri+++Le++G+++d XP_010525292.1 28 VRSRWSPKPEQILILESIFNSGMVNPPKDETVRIRKMLEQFGAVGD 73 589*****************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MAQQAQDRHR NTKNHGSASF SSAATEPVRS RWSPKPEQIL ILESIFNSGM VNPPKDETVR 60 IRKMLEQFGA VGDTVTATPR TMAPPPFPRP QPNRSGHVVP HNWGYGGNCS NSDSYFLGTQ 120 SQVPSFYHGV SSLASSGSSS LGGIDMENLF TMPSQMGFNE ADHHHQYVSN VASNLCPTDQ 180 NSNFQFQQGG TITVFINGVP TEVPRGPINT KAMFDEDLVL LHSSGDPLPT DEFGFLMYSL 240 QHGDAYFLVP RQT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010525292.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019056695.1	1e-113	PREDICTED: WUSCHEL-related homeobox 11-like
Swissprot	Q6X7J3	2e-81	WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBL	B3H5D3	2e-83	B3H5D3_ARATH; WUSCHEL related homeobox 11
STRING	XP_010525292.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2819	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.2	1e-85	WUSCHEL related homeobox 11

Publications ? help Back to Top
Hu X,Xu L Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis. Plant Physiol., 2016. 172(4): p. 2363-2373 [PMID:27784768] Sheng L, et al. Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture. Development, 2017. 144(17): p. 3126-3133 [PMID:28743799] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138] Baesso B, et al. Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana. Plant Biol (Stuttg), 2018. 20(3): p. 426-432 [PMID:29450949]