PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010525329.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MIKC_MADS
Protein Properties Length: 262aa    MW: 30422.3 Da    PI: 9.5548
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010525329.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.17.2e-313786150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLC+aeva+iifss+g+lyey+
  XP_010525329.1 37 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCEAEVALIIFSSRGRLYEYA 86
                    79***********************************************8 PP
2K-box93.53.5e-31108198797
           K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                      s++e +++++qqe++kL+++i+ +q+ +R++lGe+L+sL++k+L++Le++Lek++ +iRskKnelll++ie++qk+   l ++ ++L+++
  XP_010525329.1 108 PSVNEINTQYYQQEASKLRRQIRDIQNMNRNILGESLGSLNFKDLKNLESRLEKGIARIRSKKNELLLSEIEYMQKRVTFLPSQGNELQSE 198
                     4488999**********************************************************************98776666666654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.3192989IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-402988IPR002100Transcription factor, MADS-box
CDDcd002659.26E-4430103No hitNo description
SuperFamilySSF554552.62E-3230103IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-323151IPR002100Transcription factor, MADS-box
PROSITE patternPS0035003185IPR002100Transcription factor, MADS-box
PfamPF003191.1E-253885IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-325166IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-326687IPR002100Transcription factor, MADS-box
PfamPF014867.0E-23114198IPR002487Transcription factor, K-box
PROSITE profilePS5129714.16115212IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MQQLSVGDKV MNMEMAKNEA ESSNNTKKIG RGKIEIKRIE NTTNRQVTFC KRRNGLLKKA  60
YELSVLCEAE VALIIFSSRG RLYEYANSSV RGTIERYKKA SSDAVNPPSV NEINTQYYQQ  120
EASKLRRQIR DIQNMNRNIL GESLGSLNFK DLKNLESRLE KGIARIRSKK NELLLSEIEY  180
MQKRVTFLPS QGNELQSETF FLREKIAENE RFQQEQEQQQ QQQGAVYESH ESQQYNRSYI  240
PVNLLEPNQQ FSGQDQPPLQ LV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-2029101173Myocyte-specific enhancer factor 2B
1tqe_Q4e-2029101173Myocyte-specific enhancer factor 2B
1tqe_R4e-2029101173Myocyte-specific enhancer factor 2B
1tqe_S4e-2029101173Myocyte-specific enhancer factor 2B
5f28_A6e-202997169MEF2C
5f28_B6e-202997169MEF2C
5f28_C6e-202997169MEF2C
5f28_D6e-202997169MEF2C
6byy_A5e-2029101173MEF2 CHIMERA
6byy_B5e-2029101173MEF2 CHIMERA
6byy_C5e-2029101173MEF2 CHIMERA
6byy_D5e-2029101173MEF2 CHIMERA
6c9l_A4e-2029101173Myocyte-specific enhancer factor 2B
6c9l_B4e-2029101173Myocyte-specific enhancer factor 2B
6c9l_C4e-2029101173Myocyte-specific enhancer factor 2B
6c9l_D4e-2029101173Myocyte-specific enhancer factor 2B
6c9l_E4e-2029101173Myocyte-specific enhancer factor 2B
6c9l_F4e-2029101173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Interacts genetically with TT16/AGL32 in a partially antagonistic manner during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). {ECO:0000269|PubMed:27776173}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010525329.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010525329.10.0PREDICTED: agamous-like MADS-box protein AGL1 isoform X1
SwissprotP293811e-130AGL1_ARATH; Agamous-like MADS-box protein AGL1
TrEMBLR0HTN51e-129R0HTN5_9BRAS; Uncharacterized protein
STRINGXP_010525329.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33412350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.11e-118MIKC_MADS family protein
Publications ? help Back to Top
  1. Matalon O, et al.
    Dephosphorylation of the adaptor LAT and phospholipase C-γ by SHP-1 inhibits natural killer cell cytotoxicity.
    Sci Signal, 2016. 9(429): p. ra54
    [PMID:27221712]
  2. Ehlers K, et al.
    The MADS Box Genes ABS, SHP1, and SHP2 Are Essential for the Coordination of Cell Divisions in Ovule and Seed Coat Development and for Endosperm Formation in Arabidopsis thaliana.
    PLoS ONE, 2016. 11(10): p. e0165075
    [PMID:27776173]