PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010525343.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MIKC_MADS
Protein Properties Length: 252aa    MW: 29336 Da    PI: 9.5628
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010525343.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.26.7e-312776150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLC+aeva+iifss+g+lyey+
  XP_010525343.1 27 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCEAEVALIIFSSRGRLYEYA 76
                    79***********************************************8 PP
2K-box93.63.3e-3198188797
           K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                      s++e +++++qqe++kL+++i+ +q+ +R++lGe+L+sL++k+L++Le++Lek++ +iRskKnelll++ie++qk+   l ++ ++L+++
  XP_010525343.1  98 PSVNEINTQYYQQEASKLRRQIRDIQNMNRNILGESLGSLNFKDLKNLESRLEKGIARIRSKKNELLLSEIEYMQKRVTFLPSQGNELQSE 188
                     4488999**********************************************************************98776666666654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.3191979IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-401978IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-322093IPR002100Transcription factor, MADS-box
CDDcd002651.05E-432093No hitNo description
PRINTSPR004042.4E-322141IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002175IPR002100Transcription factor, MADS-box
PfamPF003191.0E-252875IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-324156IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-325677IPR002100Transcription factor, MADS-box
PfamPF014866.4E-23104188IPR002487Transcription factor, K-box
PROSITE profilePS5129714.16105202IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MNMEMAKNEA ESSNNTKKIG RGKIEIKRIE NTTNRQVTFC KRRNGLLKKA YELSVLCEAE  60
VALIIFSSRG RLYEYANSSV RGTIERYKKA SSDAVNPPSV NEINTQYYQQ EASKLRRQIR  120
DIQNMNRNIL GESLGSLNFK DLKNLESRLE KGIARIRSKK NELLLSEIEY MQKRVTFLPS  180
QGNELQSETF FLREKIAENE RFQQEQEQQQ QQQGAVYESH ESQQYNRSYI PVNLLEPNQQ  240
FSGQDQPPLQ LV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-201991173Myocyte-specific enhancer factor 2B
1tqe_Q3e-201991173Myocyte-specific enhancer factor 2B
1tqe_R3e-201991173Myocyte-specific enhancer factor 2B
1tqe_S3e-201991173Myocyte-specific enhancer factor 2B
5f28_A4e-201987169MEF2C
5f28_B4e-201987169MEF2C
5f28_C4e-201987169MEF2C
5f28_D4e-201987169MEF2C
6byy_A4e-201991173MEF2 CHIMERA
6byy_B4e-201991173MEF2 CHIMERA
6byy_C4e-201991173MEF2 CHIMERA
6byy_D4e-201991173MEF2 CHIMERA
6c9l_A3e-201991173Myocyte-specific enhancer factor 2B
6c9l_B3e-201991173Myocyte-specific enhancer factor 2B
6c9l_C3e-201991173Myocyte-specific enhancer factor 2B
6c9l_D3e-201991173Myocyte-specific enhancer factor 2B
6c9l_E3e-201991173Myocyte-specific enhancer factor 2B
6c9l_F3e-201991173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Interacts genetically with TT16/AGL32 in a partially antagonistic manner during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). {ECO:0000269|PubMed:27776173}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010525343.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010525329.10.0PREDICTED: agamous-like MADS-box protein AGL1 isoform X1
SwissprotP293811e-130AGL1_ARATH; Agamous-like MADS-box protein AGL1
TrEMBLA0A347Z9M01e-129A0A347Z9M0_MATIN; MADS box transcription factor
TrEMBLR0HTN51e-129R0HTN5_9BRAS; Uncharacterized protein
STRINGXP_010525329.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.11e-119MIKC_MADS family protein
Publications ? help Back to Top
  1. Matalon O, et al.
    Dephosphorylation of the adaptor LAT and phospholipase C-γ by SHP-1 inhibits natural killer cell cytotoxicity.
    Sci Signal, 2016. 9(429): p. ra54
    [PMID:27221712]
  2. Ehlers K, et al.
    The MADS Box Genes ABS, SHP1, and SHP2 Are Essential for the Coordination of Cell Divisions in Ovule and Seed Coat Development and for Endosperm Formation in Arabidopsis thaliana.
    PLoS ONE, 2016. 11(10): p. e0165075
    [PMID:27776173]