PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010525409.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bZIP

Protein Properties

Length: 368aa MW: 40148.6 Da PI: 6.3553

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010525409.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.9	1.4e-10	159	217	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r + NR +A rs +RK +i eLe+kv++L++e ++L +l+ + l se+ XP_010525409.1 159 KRAKRIIANRQSAARSKERKARYILELERKVQTLQTEATTLSAQLSLFQRDTNGLSSEN 217 9*****************************************99998887777776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.6E-17	155	219	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.691	157	220	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.5E-8	157	213	No hit	No description
Pfam	PF00170	1.9E-9	159	217	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.66E-10	159	210	No hit	No description
CDD	cd14703	1.28E-23	160	209	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MEDPSNAKPN PSNHHRPQCP TPPLANPSAV PPAPTPTPFR GPYHRRAHSE VQFRLPEDMD 60 LSDPFGGFDD LGSEDDLFCS YMDIEKLGSG SGSASDSAGL RSDNPLLGEN GGGGFDEAGN 120 SKPRHRHSLS VDGSSLESIE AKKAMAPDKL AELWVADPKR AKRIIANRQS AARSKERKAR 180 YILELERKVQ TLQTEATTLS AQLSLFQRDT NGLSSENTEL KVRLQTMEQH AKLRDELNEE 240 LKKEIDRLKF VTGETHGDAY NLGIAPGCMQ YPQSFFQPLT RAAASPSNAQ NMQMAPQQFH 300 LFRPNNGIPN SANMTASAHQ PLLNSFSEAM QYDPLGRLQG LDISSCGRGG SNFGGRPSDS 360 VSESSSTM

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MEDPSNAKPN PSNHHRPQCP TPPLANPSAV PPAPTPTPFR GPYHRRAHSE VQFRLPEDMD  60
LSDPFGGFDD LGSEDDLFCS YMDIEKLGSG SGSASDSAGL RSDNPLLGEN GGGGFDEAGN  120
SKPRHRHSLS VDGSSLESIE AKKAMAPDKL AELWVADPKR AKRIIANRQS AARSKERKAR  180
YILELERKVQ TLQTEATTLS AQLSLFQRDT NGLSSENTEL KVRLQTMEQH AKLRDELNEE  240
LKKEIDRLKF VTGETHGDAY NLGIAPGCMQ YPQSFFQPLT RAAASPSNAQ NMQMAPQQFH  300
LFRPNNGIPN SANMTASAHQ PLLNSFSEAM QYDPLGRLQG LDISSCGRGG SNFGGRPSDS  360
VSESSSTM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010525409.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010525409.1	0.0	PREDICTED: transcription factor RF2b-like
Swissprot	O22873	1e-162	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A1J3EZH9	1e-165	A0A1J3EZH9_NOCCA; Transcription factor RF2b (Fragment)
TrEMBL	A0A1J3GSQ4	1e-165	A0A1J3GSQ4_NOCCA; Transcription factor RF2b
STRING	XP_010525409.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4042	27	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-146	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]