PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010525742.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 148aa    MW: 17028.4 Da    PI: 8.5148
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010525742.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH383e-1283128655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri  ++ +L+el+P+     +k  s a++L +Ave+Ik Lq
  XP_010525742.1  83 SIAERERRTRISGKLKKLQELVPNM----DKQTSYADMLDLAVEHIKGLQ 128
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.05677127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-1680141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.07E-1081132No hitNo description
Gene3DG3DSA:4.10.280.105.1E-1582140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-1383133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-983128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MSFGIENHHH HSWDTPSSNH ISFTIDQPGK RSKTTDFFTL ETQFSMPQTS MEIARMENLM  60
SIPEDSVPCR IRAKRGCATH PRSIAERERR TRISGKLKKL QELVPNMDKQ TSYADMLDLA  120
VEHIKGLQHQ VEKLQTEMEK CTCGACKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010525742.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010525742.21e-109PREDICTED: transcription factor bHLH129-like
SwissprotQ9ZW812e-76BH129_ARATH; Transcription factor bHLH129
TrEMBLA0A1J3H9U23e-88A0A1J3H9U2_NOCCA; Uncharacterized protein
TrEMBLR0HDD95e-87R0HDD9_9BRAS; Uncharacterized protein
STRINGXP_010525742.11e-108(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103291833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43140.25e-88bHLH family protein